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AGN33828.1
Arc-VirHQ332141__AGN33828.1__HALG-00040__00040
Identity
- Accession:
- HQ332141 ↗
- Protein ID:
- AGN33828.1 ↗
- Kingdom:
- archaea
Quality
81.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kirjokansivirales›
Graaviviridae›
Seejivirus›
Halorubrum_virus_CGphi46
TaxID: 754066
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-87
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 52.0 | 3.47e-01 | 100.0% | 61.2% |
| 1poiB00 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.60 | 45.0 | 3.07e-01 | 96.7% | 20.0% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 3.32e-01 | 88.3% | 87.9% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.58 | 47.0 | 4.63e-01 | 98.3% | 88.2% |
| 3hf7A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 40.0 | 3.26e-01 | 80.0% | 50.4% |
| 2y38A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.17e-01 | 98.3% | 38.6% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 37.0 | 3.22e-01 | 100.0% | 44.3% |
| 4jotA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 44.0 | 3.17e-01 | 96.7% | 94.8% |
| 5oyhD00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 45.0 | 3.32e-01 | 98.3% | 46.5% |
| 3i8nB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 40.0 | 3.23e-01 | 80.0% | 50.0% |
| 2bw8A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.54 | 41.0 | 2.90e-01 | 88.3% | 93.4% |
| 1e3mB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.54 | 42.0 | 3.37e-01 | 90.0% | 100.0% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 45.0 | 3.31e-01 | 98.3% | 52.0% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.53 | 42.0 | 2.73e-01 | 93.3% | 27.4% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 40.0 | 3.16e-01 | 90.0% | 60.1% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 44.0 | 3.89e-01 | 100.0% | 63.2% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.52 | 42.0 | 2.62e-01 | 95.0% | 16.0% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 40.0 | 3.29e-01 | 93.3% | 70.1% |
| 3vb0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 37.0 | 3.12e-01 | 88.3% | 95.3% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.62e-01 | 88.3% | 52.7% |
| 1mtpA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 40.0 | 3.59e-01 | 100.0% | 60.4% |
| 3mlqH00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 30.0 | 3.28e-01 | 93.3% | 81.0% |
| 2g8yA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.50 | 41.0 | 2.95e-01 | 100.0% | 81.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839298 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.68 | 52.0 | 4.25e-01 | 90.0% | 44.3% |
| 3495491 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.66 | 53.0 | 3.75e-01 | 90.0% | 50.5% |
| 5045235 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 34.0 | 2.71e-01 | 100.0% | 26.2% |
| 3760807 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.58 | 46.0 | 2.78e-01 | 91.7% | 86.5% |
| 3573644 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.56 | 36.0 | 3.01e-01 | 75.0% | 34.5% |
| 3947893 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.56 | 41.0 | 3.37e-01 | 85.0% | 60.8% |
| 3884889 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 42.0 | 2.67e-01 | 88.3% | 33.6% |
| 5879 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 42.0 | 3.35e-01 | 90.0% | 66.2% |
| 4991815 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.54 | 42.0 | 3.39e-01 | 88.3% | 81.6% |
| 3643767 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.54 | 36.0 | 2.92e-01 | 78.3% | 33.6% |
| 3784943 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 43.0 | 2.77e-01 | 98.3% | 42.3% |
| 4001255 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.53 | 33.0 | 3.13e-01 | 73.3% | 46.3% |
| 3267490 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.52 | 36.0 | 2.53e-01 | 75.0% | 25.5% |
| 5052875 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.52 | 42.0 | 3.68e-01 | 98.3% | 97.1% |
| 5039133 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 42.0 | 3.63e-01 | 96.7% | 92.4% |
| 5050051 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 40.0 | 3.17e-01 | 93.3% | 68.7% |
| 3379810 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 39.0 | 3.90e-01 | 95.0% | 85.0% |
| 3615489 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.51 | 45.0 | 2.70e-01 | 96.7% | 20.3% |
| 2526324 | 7086.1.1.0 ↗ | 0.51 | 46.0 | 3.93e-01 | 100.0% | 75.8% | |
| 4636242 | 101.35.1.37 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › FlgI | 0.51 | 39.0 | 3.63e-01 | 83.3% | 67.5% |
| 3262255 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.50 | 39.0 | 3.02e-01 | 96.7% | 54.9% |