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HQ337021.1__AGN12018.1__PRAG_00076__00074

Bact-Vir

HQ337021.1__AGN12018.1__PRAG_00076__00074

Identity

Accession:
HQ337021 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ronodorvirus› Prochlorococcus_phage_P-SSM3

TaxID: 536453

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-36
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.78 48.0 5.11e-01 88.2% 66.7%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.67 49.0 4.35e-01 97.1% 53.8%
2p8tA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.62 43.0 3.04e-01 73.5% 76.1%
4gnrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 45.0 3.17e-01 100.0% 83.7%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 40.0 2.72e-01 73.5% 24.0%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 39.0 2.38e-01 79.4% 9.7%
7t7jA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 38.0 2.34e-01 70.6% 92.6%
2ep5A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 39.0 2.55e-01 76.5% 42.4%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.55 44.0 2.99e-01 100.0% 26.9%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.53 36.0 3.10e-01 70.6% 38.1%
3ejbB01 3.30.43.20 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › 0.53 37.0 2.83e-01 73.5% 71.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.06e-01 94.1% 57.8%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 39.0 2.68e-01 97.1% 62.3%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.51 33.0 2.28e-01 100.0% 16.7%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.50 36.0 2.51e-01 79.4% 20.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4379525 2007.6.1.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Phosphatase 0.68 48.0 2.88e-01 85.3% 10.4%
4989913 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 45.0 2.71e-01 85.3% 9.4%
3288945 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.61 46.0 3.29e-01 79.4% 25.7%
5072765 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.58 45.0 2.75e-01 97.1% 50.4%
3244422 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.16e-01 100.0% 83.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.46e-01 88.2% 42.9%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 42.0 3.54e-01 91.2% 67.1%
3290481 3687.1.1.0 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain 0.57 37.0 2.68e-01 70.6% 20.0%
4024346 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.56 38.0 2.34e-01 70.6% 10.0%
3292271 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 41.0 2.57e-01 100.0% 83.0%
4023704 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 37.0 2.19e-01 91.2% 7.5%
4989504 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 39.0 2.37e-01 100.0% 15.6%
3366038 389.1.3.30 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › GUB_WAK_bind 0.52 40.0 2.65e-01 97.1% 29.2%
3969965 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 36.0 2.86e-01 100.0% 61.9%
3936316 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.51 33.0 3.00e-01 73.5% 40.0%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 36.0 3.36e-01 88.2% 51.0%
4932725 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.51 34.0 3.00e-01 73.5% 40.0%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.50 35.0 2.04e-01 88.2% 10.9%