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HQ615693.1__AEC52955.1__SCRM01_007__00007

Bact-Vir

HQ615693.1__AEC52955.1__SCRM01_007__00007

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

55.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 205-215_288-306_331-371_389-422
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 46.0 4.06e-01 80.0% 99.3%
2yu2A01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.59 41.0 2.97e-01 70.5% 95.4%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 3.98e-01 83.8% 100.0%
2w1sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 3.72e-01 73.3% 100.0%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 43.0 3.47e-01 79.0% 78.0%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 3.91e-01 78.1% 100.0%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 4.04e-01 80.0% 94.3%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.11e-01 79.0% 92.5%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.65e-01 84.8% 91.0%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.55 37.0 3.37e-01 70.5% 79.5%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.54e-01 81.9% 98.8%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.61e-01 79.0% 94.3%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.60e-01 77.1% 96.2%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 3.19e-01 77.1% 92.1%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.00e-01 79.0% 75.6%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.66e-01 81.0% 98.5%
4hsqA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.39e-01 76.2% 95.1%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 38.0 3.59e-01 81.9% 100.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944601 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.73 66.0 5.15e-01 97.1% 98.6%
4951436 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 47.0 4.08e-01 78.1% 100.0%
5034784 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 45.0 3.64e-01 81.0% 81.5%
5040308 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 45.0 3.85e-01 80.0% 97.6%
4942248 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 43.0 3.89e-01 79.0% 100.0%
3412819 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.56 42.0 3.78e-01 78.1% 93.8%
4558769 10.34.1.1 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.56 41.0 3.94e-01 76.2% 70.0%
3301025 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.56 42.0 3.20e-01 79.0% 51.2%
3384843 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.55 42.0 3.05e-01 80.0% 37.5%
3813996 10.32.1.199 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.55 47.0 3.86e-01 97.1% 95.1%
2323933 10.32.1.58 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BPA_C 0.54 41.0 3.87e-01 80.0% 90.6%
3421650 10.32.1.199 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.54 39.0 3.75e-01 74.3% 95.8%
5044435 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 40.0 3.45e-01 78.1% 96.4%
3166916 2484.1.1.153 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.54 40.0 2.84e-01 79.0% 48.6%
3939866 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 40.0 3.95e-01 80.0% 100.0%
3165210 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.53 39.0 2.80e-01 75.2% 67.2%
3521811 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 40.0 3.37e-01 79.0% 90.3%
3332971 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 3.15e-01 88.6% 42.8%
5078262 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 39.0 3.89e-01 78.1% 96.4%
3908506 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.53 39.0 3.54e-01 77.1% 93.6%
3707942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 39.0 3.81e-01 77.1% 99.1%
4273934 11.1.5.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ChiC 0.52 42.0 3.79e-01 88.6% 84.7%
356877 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.52 39.0 3.66e-01 81.0% 98.5%
3776151 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.51 41.0 3.58e-01 88.6% 84.8%
D2 medium residues 216-287_307-330_372-388
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.56 29.0 3.23e-01 100.0% 61.1%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.52 31.0 3.05e-01 100.0% 54.6%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 44.0 3.44e-01 97.3% 95.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940173 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.51 22.0 3.22e-01 91.2% 97.8%
3935038 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 30.0 3.50e-01 89.4% 83.5%
3415735 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.51 33.0 3.54e-01 100.0% 76.8%