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HQ615693.1__AEC52977.1__SCRM01_030__00030

Bact-Vir

HQ615693.1__AEC52977.1__SCRM01_030__00030

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-198
PDB
Domain cluster: rep: IMGVR_UViG_3300001346_000109-3300001346-JGI20151J14362_100012206__D11-176
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF11649.13 best T4_neck-protein 46.1 5.80e-12 50.5% 30.6%
PF11649.13 T4_neck-protein 51.0 1.90e-13 45.6% 23.0%
D2 high residues 203-326
PDB
Domain cluster: rep: KJ019042.1__AIX17740.1__Syn7803C67_88__00088__D18-132
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 46.0 5.23e-01 94.4% 94.6%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 47.0 5.13e-01 96.0% 90.3%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 43.0 4.46e-01 85.5% 80.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 28.0 3.49e-01 77.4% 76.7%
2khaA01 2.60.40.2140 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-glucan-recognition protein, N-terminal domain 0.56 39.0 4.24e-01 100.0% 89.1%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 35.0 3.84e-01 96.8% 78.0%
2npiA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.55 41.0 4.44e-01 85.5% 94.2%
3cxeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.94e-01 93.5% 85.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.92e-01 78.2% 98.6%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.62e-01 93.5% 76.0%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 39.0 3.46e-01 91.1% 55.0%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 33.0 3.67e-01 87.1% 83.2%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.46e-01 93.5% 80.4%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.51 40.0 3.89e-01 94.4% 75.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4429352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 40.0 4.65e-01 85.5% 76.7%
3822850 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 47.0 5.21e-01 96.0% 94.0%
4014463 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 46.0 4.34e-01 83.9% 75.3%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.57 34.0 4.01e-01 77.4% 84.7%
3743730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 31.0 3.83e-01 79.0% 85.3%
3881059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 4.17e-01 89.5% 100.0%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.55 31.0 3.85e-01 79.8% 90.7%
3541156 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 33.0 3.59e-01 93.5% 80.0%
4017877 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 4.15e-01 97.6% 98.8%
3948941 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 36.0 3.42e-01 100.0% 59.4%
3901960 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 32.0 3.46e-01 95.2% 75.2%