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HQ615693.1__AEC53053.1__SCRM01_107c__00107

Bact-Vir

HQ615693.1__AEC53053.1__SCRM01_107c__00107

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: rep: CAKLQE020000001.1__CAH1066682.1__SAMEA5780037_00015__00015__D55-133
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27001.1 best Phage_T4_Y07B 30.8 3.90e-07 98.3% 59.8%
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.75 48.0 5.09e-01 100.0% 74.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 6.02e-01 96.6% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.60e-01 100.0% 79.0%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.88e-01 100.0% 98.2%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 59.0 5.32e-01 100.0% 75.9%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.66e-01 100.0% 70.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.46e-01 98.3% 98.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.49e-01 98.3% 91.5%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 57.0 5.33e-01 100.0% 87.8%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 55.0 5.40e-01 100.0% 96.9%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.54e-01 100.0% 96.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.98e-01 100.0% 78.5%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.33e-01 100.0% 94.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.42e-01 100.0% 90.3%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 4.90e-01 100.0% 75.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.59e-01 100.0% 98.3%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.04e-01 100.0% 84.2%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.14e-01 100.0% 82.7%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.01e-01 100.0% 82.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.39e-01 100.0% 86.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.30e-01 100.0% 67.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.09e-01 100.0% 90.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 36.0 3.49e-01 93.1% 49.3%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 3.86e-01 93.1% 85.9%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 3.66e-01 93.1% 93.5%
3twlA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.58 48.0 3.88e-01 98.3% 65.4%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 4.16e-01 89.7% 75.9%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.57 48.0 3.84e-01 100.0% 61.4%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 3.73e-01 93.1% 76.4%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 48.0 4.13e-01 93.1% 78.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.81e-01 91.4% 78.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 3.57e-01 100.0% 37.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 45.0 3.50e-01 93.1% 87.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 42.0 4.24e-01 94.8% 87.5%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.08e-01 77.6% 82.4%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.38e-01 93.1% 84.4%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 3.88e-01 94.8% 91.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.34e-01 100.0% 78.1%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.64e-01 93.1% 82.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 4.01e-01 81.0% 86.9%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.28e-01 94.8% 57.5%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.62e-01 94.8% 93.5%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 2.93e-01 79.3% 75.5%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.98e-01 96.6% 98.9%
1l9fA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.11e-01 96.6% 59.8%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 41.0 2.86e-01 89.7% 74.0%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 41.0 3.61e-01 87.9% 86.5%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.52 38.0 3.62e-01 84.5% 98.7%
8ajjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.51e-01 98.3% 76.3%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.29e-01 100.0% 82.1%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.95e-01 100.0% 48.6%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.51 37.0 3.97e-01 84.5% 90.0%
5j60A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.99e-01 98.3% 56.9%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.98e-01 100.0% 49.6%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 2.97e-01 100.0% 51.4%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.42e-01 100.0% 99.2%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.43e-01 100.0% 96.6%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.66e-01 98.3% 77.9%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.05e-01 98.3% 62.2%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.54e-01 81.0% 44.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 61.0 4.38e-01 98.3% 30.3%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.80 56.0 5.60e-01 100.0% 71.7%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.77 53.0 4.59e-01 100.0% 46.7%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.74 52.0 5.20e-01 100.0% 71.7%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.08e-01 100.0% 84.0%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 60.0 5.59e-01 100.0% 85.1%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.69 53.0 4.69e-01 100.0% 57.6%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.68 55.0 4.63e-01 100.0% 53.7%
3490327 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 46.0 3.60e-01 70.7% 79.2%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 58.0 5.42e-01 100.0% 86.7%
5071546 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 59.0 4.55e-01 100.0% 46.7%
3170922 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 55.0 5.27e-01 96.6% 77.9%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.35e-01 100.0% 85.3%
5078178 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.35e-01 100.0% 85.3%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 56.0 5.08e-01 100.0% 74.1%
3483375 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.42e-01 100.0% 84.0%
3567611 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 3.47e-01 70.7% 76.3%
4339767 6148.1.1.1 ↗ few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.66 39.0 4.45e-01 96.6% 85.0%
5073807 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 59.0 4.52e-01 100.0% 50.8%
5040422 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 57.0 5.27e-01 100.0% 84.0%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 55.0 5.20e-01 100.0% 84.0%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.65 38.0 3.47e-01 91.4% 42.5%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 55.0 5.13e-01 100.0% 81.3%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.51e-01 98.3% 96.7%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.02e-01 100.0% 80.8%
1174965 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.03e-01 100.0% 81.8%
3967078 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.62 41.0 2.61e-01 93.1% 13.1%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 43.0 4.38e-01 91.4% 78.2%
3601074 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.60 52.0 3.31e-01 100.0% 28.6%
4955327 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 42.0 4.32e-01 93.1% 81.8%
3393809 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.58 46.0 3.22e-01 91.4% 97.6%
4478612 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 44.0 3.46e-01 81.0% 45.8%
None — 0.55 49.0 2.85e-01 100.0% 27.6%
3293107 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.54 38.0 3.04e-01 100.0% 35.8%
3713577 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.54 45.0 2.88e-01 100.0% 27.8%
3400434 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.54 46.0 2.84e-01 100.0% 92.1%
4554308 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 43.0 3.23e-01 100.0% 66.3%
3395421 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.53 46.0 2.82e-01 100.0% 92.7%
4975047 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.53 43.0 2.91e-01 98.3% 65.1%
3914004 316.1.1.6 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.53 42.0 2.74e-01 89.7% 61.8%
4934718 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.52 39.0 2.74e-01 82.8% 49.1%
4962828 283.2.1.20 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › DUF7261 0.52 40.0 3.17e-01 84.5% 92.8%
4986017 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 42.0 4.02e-01 94.8% 75.7%
4982875 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.52 41.0 3.03e-01 98.3% 57.5%
4948974 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 41.0 3.28e-01 98.3% 78.9%
4251607 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 41.0 3.02e-01 98.3% 56.9%
4173879 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 44.0 2.68e-01 100.0% 45.2%
3953658 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 44.0 2.69e-01 100.0% 38.4%
4386008 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 3.29e-01 100.0% 95.0%
2073980 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 43.0 3.18e-01 100.0% 84.4%
1868637 2003.1.2.94 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, Pyr_redox_2 0.50 39.0 3.34e-01 98.3% 85.1%
2775775 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 40.0 2.64e-01 98.3% 74.3%
4878665 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 39.0 2.95e-01 94.8% 80.5%
5007686 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 42.0 3.21e-01 100.0% 91.6%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 38.0 2.52e-01 87.9% 56.6%