←Back to structures

HQ615693.1__AEC53059.1__SCRM01_113c__00113

Bact-Vir

HQ615693.1__AEC53059.1__SCRM01_113c__00113

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.64 55.0 3.37e-01 100.0% 34.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268175 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.75 53.0 4.47e-01 76.6% 46.7%
D2 medium residues 58-111
PDB
Domain cluster: rep: OQ718882.1__WHM52888.1__IOBOPIKK_00083__00081__D5-62
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 26.8 8.00e-06 77.8% 27.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.80 62.0 5.03e-01 96.3% 46.4%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 67.0 4.87e-01 98.1% 34.9%
8hp8A01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.77 58.0 4.16e-01 90.7% 28.8%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.76 57.0 4.20e-01 98.1% 30.4%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.57 45.0 3.26e-01 90.7% 35.4%
3rnvA00 3.90.70.150 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Helper component proteinase 0.52 43.0 3.43e-01 100.0% 85.4%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.51 43.0 2.74e-01 100.0% 94.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949298 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.91 74.0 4.99e-01 94.4% 26.9%
2771202 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.86 72.0 5.00e-01 98.1% 30.6%
3974990 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.79 63.0 4.90e-01 100.0% 41.8%
159686 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.79 67.0 4.87e-01 98.1% 34.9%
3033455 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.77 61.0 4.39e-01 98.1% 29.8%
2488339 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.76 57.0 4.20e-01 98.1% 30.4%
D3 medium residues 112-185
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 23.9 6.30e-05 97.3% 47.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 48.0 4.68e-01 86.5% 79.5%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 45.0 4.29e-01 85.1% 79.5%
7r0kA01 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.57 42.0 3.77e-01 79.7% 57.4%
7dniB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 37.0 3.54e-01 71.6% 86.5%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 44.0 4.36e-01 97.3% 93.6%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.50 39.0 2.57e-01 89.2% 97.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621520 601.1.2.54 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › SCAMP 0.58 42.0 3.29e-01 75.7% 69.0%
3484519 633.10.1.22 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › SCAMP 0.54 42.0 3.22e-01 82.4% 66.3%