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HQ615693.1__AEC53135.1__SCRM01_189__00189

Bact-Vir

HQ615693.1__AEC53135.1__SCRM01_189__00189

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: MN695334.1__QGT54418.1__b3_0174__00160__D2-64
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 46.0 4.11e-01 100.0% 44.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.83e-01 95.5% 90.0%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 45.0 4.00e-01 100.0% 49.0%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 44.0 3.87e-01 100.0% 46.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 45.0 3.42e-01 100.0% 29.3%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 50.0 4.43e-01 100.0% 57.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.78e-01 100.0% 92.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 42.0 3.93e-01 95.5% 52.9%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 45.0 4.00e-01 76.1% 87.5%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 39.0 2.96e-01 100.0% 27.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.49e-01 100.0% 72.7%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 2.99e-01 100.0% 35.4%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 47.0 4.52e-01 86.6% 88.7%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 46.0 3.74e-01 100.0% 45.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 45.0 3.84e-01 100.0% 49.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 51.0 4.18e-01 100.0% 52.9%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.59 32.0 3.44e-01 82.1% 56.9%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.59 39.0 3.84e-01 100.0% 60.5%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.81e-01 98.5% 91.3%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.59e-01 100.0% 41.6%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 42.0 3.41e-01 100.0% 40.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.57e-01 100.0% 41.6%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.57 45.0 3.67e-01 95.5% 55.9%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.56e-01 100.0% 50.0%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 42.0 3.43e-01 100.0% 43.9%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.56 47.0 3.82e-01 100.0% 91.5%
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.55 43.0 4.29e-01 88.1% 87.1%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 38.0 3.26e-01 100.0% 45.1%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 40.0 3.16e-01 100.0% 37.3%
3citA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 35.0 2.73e-01 85.1% 29.7%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.53 33.0 2.12e-01 100.0% 10.9%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 42.0 3.63e-01 85.1% 82.2%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 2.96e-01 77.6% 89.8%
3p9dG01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 45.0 3.10e-01 100.0% 90.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 33.0 2.96e-01 100.0% 43.3%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 46.0 3.77e-01 100.0% 76.7%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 2.75e-01 100.0% 78.9%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 35.0 2.21e-01 74.6% 45.6%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 42.0 4.06e-01 97.0% 85.0%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.50 36.0 2.82e-01 77.6% 37.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.50e-01 98.5% 91.4%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.74 64.0 6.52e-01 98.5% 100.0%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.73 64.0 6.19e-01 100.0% 97.3%
4936253 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 45.0 4.50e-01 98.5% 67.1%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.66 57.0 4.62e-01 100.0% 51.7%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.72e-01 100.0% 94.3%
3552986 11.1.1.275 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N 0.66 42.0 3.93e-01 100.0% 50.6%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.66 57.0 4.60e-01 100.0% 51.7%
4959192 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 45.0 4.56e-01 98.5% 72.3%
4979962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 46.0 4.65e-01 100.0% 73.8%
3579804 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 43.0 3.82e-01 100.0% 46.0%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 45.0 4.49e-01 100.0% 68.6%
4955296 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 44.0 4.54e-01 98.5% 72.3%
4981300 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 44.0 4.54e-01 98.5% 72.3%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 46.0 4.54e-01 100.0% 70.0%
5036647 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 44.0 4.41e-01 98.5% 67.1%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 43.0 4.36e-01 94.0% 69.2%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 46.0 4.24e-01 100.0% 56.7%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 45.0 4.58e-01 100.0% 73.8%
4060455 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 45.0 4.49e-01 100.0% 70.0%
4932588 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 44.0 4.54e-01 100.0% 73.8%
4937586 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 41.0 4.22e-01 94.0% 67.7%
3973043 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.45e-01 98.5% 72.3%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 42.0 4.24e-01 95.5% 69.2%
3721973 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 48.0 4.64e-01 98.5% 73.3%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.21e-01 100.0% 87.8%
3970459 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 41.0 4.21e-01 97.0% 71.9%
5054505 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 51.0 4.68e-01 100.0% 95.6%
5037761 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.56 46.0 3.51e-01 95.5% 45.1%
5025204 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 49.0 4.46e-01 98.5% 78.9%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 43.0 2.75e-01 100.0% 16.1%
3583595 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 30.0 3.20e-01 80.6% 60.0%
4933205 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 47.0 4.30e-01 95.5% 76.7%
3216812 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.55 44.0 4.06e-01 100.0% 68.2%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.54 44.0 3.72e-01 100.0% 51.6%
3953960 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 48.0 3.36e-01 100.0% 64.7%
3788897 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.54 46.0 2.55e-01 100.0% 18.9%
3630069 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.52 38.0 2.27e-01 82.1% 13.9%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 38.0 3.36e-01 100.0% 50.9%
5080047 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.51 41.0 2.74e-01 95.5% 57.9%
4496501 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 40.0 2.67e-01 89.6% 75.0%
None — 0.51 42.0 2.64e-01 98.5% 69.1%
3716727 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 41.0 2.65e-01 97.0% 23.5%
3877814 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.50 41.0 4.14e-01 92.5% 95.4%
3280127 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.50 44.0 3.13e-01 100.0% 64.8%