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HQ615693.1__AEC53146.1__SCRM01_200__00200

Bact-Vir

HQ615693.1__AEC53146.1__SCRM01_200__00200

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-70
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 5.60e-01 100.0% 66.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 6.12e-01 100.0% 98.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.90e-01 100.0% 79.2%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 47.0 4.93e-01 80.6% 73.2%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 6.29e-01 100.0% 91.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 58.0 5.78e-01 100.0% 88.9%
6fexA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 54.0 4.60e-01 85.5% 96.0%
1jb3A00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 57.0 4.49e-01 91.9% 76.4%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.17e-01 100.0% 74.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 60.0 5.20e-01 100.0% 80.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.59e-01 100.0% 83.3%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.24e-01 100.0% 83.9%
4ngdA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.65 59.0 4.76e-01 100.0% 80.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 58.0 5.35e-01 100.0% 84.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.63 47.0 4.86e-01 93.5% 89.3%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 4.45e-01 100.0% 73.3%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 4.58e-01 100.0% 76.2%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 51.0 3.98e-01 100.0% 49.3%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.94e-01 100.0% 81.6%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 52.0 4.22e-01 100.0% 66.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 43.0 4.33e-01 95.2% 76.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 43.0 4.53e-01 96.8% 89.3%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.58 52.0 4.44e-01 100.0% 73.0%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 49.0 3.68e-01 100.0% 41.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.26e-01 100.0% 98.1%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.25e-01 96.8% 92.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.22e-01 96.8% 94.2%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.19e-01 96.8% 94.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.12e-01 96.8% 87.5%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 4.08e-01 96.8% 94.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.64e-01 77.4% 93.7%
5yyfA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.53 37.0 3.01e-01 75.8% 67.4%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 40.0 4.13e-01 96.8% 91.5%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.34e-01 79.0% 79.6%
6jqlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.16e-01 93.5% 76.4%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 39.0 2.94e-01 85.5% 47.2%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.42e-01 88.7% 86.5%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.52e-01 95.2% 88.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.61e-01 100.0% 80.9%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 38.0 3.39e-01 88.7% 72.3%
1fotA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 38.0 3.27e-01 85.5% 87.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 59.0 5.11e-01 100.0% 54.7%
3888349 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.75 57.0 4.39e-01 100.0% 38.5%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 69.0 6.47e-01 100.0% 87.8%
3911348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 4.36e-01 100.0% 38.5%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 63.0 3.87e-01 96.8% 35.9%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 57.0 4.71e-01 100.0% 50.5%
3624304 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 63.0 5.46e-01 100.0% 82.1%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.70 64.0 5.45e-01 100.0% 77.9%
2855767 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.69 64.0 4.92e-01 100.0% 51.2%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.66e-01 100.0% 82.9%
3873627 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 61.0 4.93e-01 100.0% 66.1%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 60.0 5.54e-01 100.0% 92.5%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 60.0 4.28e-01 100.0% 41.1%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 61.0 5.46e-01 100.0% 75.3%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.67 53.0 4.90e-01 100.0% 66.3%
573 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 60.0 5.20e-01 100.0% 80.0%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.67 60.0 3.85e-01 100.0% 26.7%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.67 51.0 5.33e-01 95.2% 90.9%
3485761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 4.27e-01 100.0% 45.0%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.65 59.0 4.83e-01 100.0% 78.2%
5062756 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 5.26e-01 93.5% 98.0%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 5.05e-01 100.0% 72.6%
3923767 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 57.0 5.04e-01 98.4% 77.8%
3177842 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 58.0 4.63e-01 100.0% 59.2%
3205674 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.64 55.0 3.61e-01 100.0% 50.2%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.63 56.0 4.61e-01 100.0% 93.8%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.48e-01 100.0% 90.0%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.63 56.0 4.78e-01 100.0% 89.0%
3187166 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.63 51.0 4.62e-01 98.4% 65.9%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.97e-01 100.0% 79.8%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 53.0 5.00e-01 100.0% 78.8%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.62 47.0 4.79e-01 93.5% 86.4%
4017498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.43e-01 100.0% 76.3%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.72e-01 100.0% 81.0%
3521181 4.1.1.229 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 3.89e-01 100.0% 41.1%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 53.0 4.38e-01 100.0% 60.9%
4422325 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.74e-01 100.0% 78.7%
4439550 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.60 45.0 3.51e-01 82.3% 59.4%
4243071 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.60 42.0 4.42e-01 96.8% 87.3%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.59 51.0 3.75e-01 100.0% 73.3%
2897014 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 42.0 4.26e-01 96.8% 80.0%
3174822 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 52.0 4.80e-01 100.0% 90.0%
4039571 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.59 42.0 4.44e-01 96.8% 89.1%
4456205 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 44.0 4.58e-01 96.8% 92.7%
5013328 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 44.0 4.49e-01 96.8% 86.7%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 41.0 4.13e-01 96.8% 75.4%
4336845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 40.0 4.12e-01 96.8% 80.0%
4163458 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 40.0 4.22e-01 96.8% 87.3%
5041849 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 41.0 4.22e-01 96.8% 89.1%
4971071 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 41.0 4.26e-01 96.8% 89.1%
3411797 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.57 49.0 4.19e-01 100.0% 73.3%
5000723 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 3.87e-01 95.2% 79.2%
3404320 395.1.1.1 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_C 0.56 36.0 4.03e-01 74.2% 95.3%
3987332 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 40.0 4.15e-01 96.8% 89.1%
3792066 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 49.0 3.11e-01 100.0% 26.7%
3934544 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 43.0 2.83e-01 93.5% 26.2%
3839465 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 38.0 2.62e-01 96.8% 18.5%
3630547 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 43.0 2.83e-01 96.8% 25.5%
3227845 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 44.0 2.80e-01 100.0% 23.3%
3600576 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.73e-01 90.3% 29.9%
3624726 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 43.0 2.76e-01 98.4% 24.9%
3783284 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.52 42.0 3.33e-01 100.0% 64.9%
3615114 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.36e-01 100.0% 62.2%