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HQ615693.1__AEC53149.1__SCRM01_203__00203

Bact-Vir

HQ615693.1__AEC53149.1__SCRM01_203__00203

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-70
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i2aA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.69 47.0 4.27e-01 71.4% 84.0%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 54.0 5.48e-01 87.1% 92.6%
4lzgA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.67 46.0 4.24e-01 72.9% 86.0%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.64 49.0 4.07e-01 85.7% 48.5%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.47e-01 88.6% 71.6%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 53.0 4.26e-01 97.1% 69.8%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 42.0 4.62e-01 81.4% 96.4%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.58 41.0 3.33e-01 91.4% 39.5%
4ertA01 1.10.490.160 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.58 40.0 3.03e-01 70.0% 80.4%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 3.62e-01 81.4% 63.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 44.0 3.89e-01 81.4% 76.7%
3hzjA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.58 45.0 3.53e-01 84.3% 87.2%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 40.0 3.20e-01 74.3% 63.6%
3d0wA00 1.10.760.20 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 0.57 35.0 3.28e-01 80.0% 50.0%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 39.0 3.36e-01 74.3% 84.2%
3w0lD02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 42.0 2.78e-01 82.9% 69.0%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.77e-01 72.9% 88.7%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 36.0 3.37e-01 70.0% 71.4%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 34.0 3.61e-01 70.0% 70.8%
4i16A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 41.0 3.84e-01 85.7% 94.4%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 36.0 3.31e-01 75.7% 63.3%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 37.0 2.46e-01 85.7% 18.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240158 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.72 54.0 4.96e-01 80.0% 87.8%
3436562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 41.0 4.02e-01 70.0% 58.7%
4949701 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.64 44.0 3.65e-01 71.4% 67.5%
2673030 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.62 47.0 4.33e-01 84.3% 100.0%
3914715 605.1.1.235 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD 0.61 52.0 5.11e-01 91.4% 93.3%
54487 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 44.0 3.77e-01 77.1% 77.4%
3436965 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.61 34.0 3.12e-01 78.6% 40.0%
4927740 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 46.0 3.82e-01 82.9% 69.2%
3591325 4336.2.1.0 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.61 41.0 3.68e-01 70.0% 61.2%
3784238 3758.1.1.99 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Tht1 0.61 41.0 3.86e-01 70.0% 69.4%
4965784 3455.1.1.17 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › DUF7853 0.59 41.0 3.90e-01 74.3% 78.8%
3608416 4336.2.1.0 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.58 39.0 3.72e-01 70.0% 69.4%
3991717 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 40.0 3.32e-01 72.9% 43.2%
3738741 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.58 39.0 3.79e-01 70.0% 71.2%
5067754 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 42.0 4.70e-01 85.7% 100.0%
5080963 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 40.0 3.78e-01 72.9% 74.1%
3878853 4044.1.1.13 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › BicD 0.57 46.0 4.38e-01 91.4% 78.8%
3960907 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 2.72e-01 81.4% 27.7%
4369892 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.54 38.0 4.09e-01 75.7% 95.0%
5036214 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 34.0 3.68e-01 71.4% 76.7%
4807989 4982.2.1.0 ↗ alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain 0.52 36.0 3.72e-01 70.0% 78.8%
4564645 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.52 41.0 3.40e-01 85.7% 88.8%
3390249 4003.1.1.0 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.52 35.0 3.43e-01 72.9% 64.0%
3584992 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 43.0 3.12e-01 98.6% 81.3%
5082532 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 42.0 4.25e-01 94.3% 92.9%
4931573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.66e-01 71.4% 91.7%
D2 medium residues 71-122
PDB
Domain cluster: representative