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HQ615693.1__AEC53170.1__SCRM01_224__00224

Bact-Vir

HQ615693.1__AEC53170.1__SCRM01_224__00224

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-26_70-107
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 42.0 3.13e-01 73.4% 70.9%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.58 34.0 2.82e-01 87.5% 31.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 2.97e-01 81.2% 41.7%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.56 43.0 4.01e-01 87.5% 92.9%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 41.0 2.98e-01 79.7% 96.0%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 33.0 3.06e-01 93.8% 46.9%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.48e-01 95.3% 94.4%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 45.0 3.58e-01 100.0% 88.0%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.50e-01 95.3% 86.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998373 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 36.0 3.96e-01 89.1% 70.0%
3886674 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.61 42.0 2.99e-01 73.4% 59.6%
3801858 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.60 37.0 3.88e-01 81.2% 68.3%
3442564 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.59 37.0 3.98e-01 81.2% 74.5%
3470856 808.1.1.0 ↗ a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein 0.58 35.0 4.27e-01 89.1% 100.0%
4023069 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.57 44.0 3.56e-01 87.5% 76.9%
3743260 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 46.0 3.59e-01 100.0% 61.3%
3606567 3156.1.1.8 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.53 39.0 2.88e-01 79.7% 84.9%
4567929 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.53 39.0 2.54e-01 82.8% 94.1%
3704403 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.40e-01 89.1% 53.7%
5048392 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.52 44.0 2.94e-01 100.0% 37.9%
4986976 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 33.0 2.69e-01 89.1% 35.0%
3514485 2007.1.6.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N 0.50 44.0 2.73e-01 100.0% 28.5%
D2 medium residues 27-69_108-135
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 49.0 4.33e-01 94.4% 63.9%
2dlcX02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.57 51.0 4.22e-01 98.6% 97.6%
3p0jA03 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.57 46.0 4.23e-01 88.7% 75.8%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 49.0 3.58e-01 100.0% 88.9%
6ks6a01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 46.0 3.17e-01 100.0% 49.8%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 45.0 3.62e-01 94.4% 80.4%
2cyaA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 49.0 4.02e-01 98.6% 95.1%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 45.0 3.45e-01 98.6% 73.3%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 39.0 3.12e-01 80.3% 56.1%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.51 42.0 3.34e-01 91.5% 100.0%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.51 35.0 2.84e-01 95.8% 36.4%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 43.0 3.01e-01 100.0% 50.0%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 36.0 3.05e-01 95.8% 44.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943285 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.18e-01 94.4% 72.6%
5072747 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.58 41.0 4.39e-01 97.2% 86.7%
4996617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.00e-01 94.4% 75.2%
4883268 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.56 49.0 3.21e-01 100.0% 64.4%
4880604 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.56 39.0 3.16e-01 94.4% 36.6%
3614377 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 50.0 3.18e-01 100.0% 39.1%
5024502 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.55 32.0 3.63e-01 87.3% 76.4%
5048102 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.55 48.0 3.14e-01 100.0% 37.9%
3864427 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.52 45.0 3.09e-01 100.0% 63.3%
3927598 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 44.0 4.08e-01 97.2% 82.2%
3507182 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.50 25.0 3.03e-01 81.7% 71.4%