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HQ615693.1__AEC53171.1__SCRM01_225__00225

Bact-Vir

HQ615693.1__AEC53171.1__SCRM01_225__00225

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-50
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.76 66.0 5.20e-01 100.0% 85.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 61.0 4.26e-01 100.0% 40.1%
1p5dX02 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.71 60.0 5.18e-01 97.9% 96.2%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.71 55.0 4.76e-01 89.4% 66.7%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 51.0 4.23e-01 78.7% 77.6%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 48.0 4.46e-01 76.6% 58.7%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.68 50.0 3.91e-01 87.2% 94.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 46.0 4.08e-01 85.1% 50.6%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 3.79e-01 83.0% 72.0%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 35.0 3.86e-01 97.9% 62.2%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 45.0 4.10e-01 78.7% 55.2%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.63 52.0 4.64e-01 100.0% 70.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 55.0 4.95e-01 100.0% 81.5%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.63 47.0 3.97e-01 80.9% 73.8%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 53.0 4.11e-01 97.9% 71.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.62 51.0 3.37e-01 100.0% 68.6%
3qyfA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.62 51.0 3.59e-01 97.9% 80.6%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 51.0 4.00e-01 100.0% 86.7%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.62 50.0 3.22e-01 91.5% 55.7%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 46.0 4.00e-01 83.0% 92.1%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 50.0 3.44e-01 100.0% 73.2%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.68e-01 91.5% 11.4%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 41.0 2.70e-01 70.2% 37.1%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.60 41.0 3.89e-01 72.3% 63.2%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 50.0 3.02e-01 97.9% 22.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 46.0 3.97e-01 100.0% 92.6%
1fjeB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 46.0 3.91e-01 100.0% 50.6%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.59 50.0 3.45e-01 97.9% 55.6%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.59 47.0 3.46e-01 87.2% 93.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.03e-01 100.0% 60.6%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 45.0 3.21e-01 89.4% 28.5%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 3.26e-01 72.3% 45.8%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 47.0 3.85e-01 100.0% 72.4%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.56 39.0 3.79e-01 74.5% 66.0%
1jnrA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.65e-01 89.4% 39.3%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 37.0 3.50e-01 70.2% 55.7%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.81e-01 93.6% 67.4%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 39.0 2.32e-01 78.7% 33.0%
3tqtB01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.31e-01 91.5% 44.5%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.55 40.0 3.13e-01 89.4% 82.0%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.55 43.0 3.59e-01 89.4% 67.0%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 38.0 3.76e-01 100.0% 72.0%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 41.0 3.31e-01 85.1% 46.8%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 38.0 3.30e-01 87.2% 92.4%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.07e-01 87.2% 50.0%
3h5eA00 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.53 40.0 2.89e-01 87.2% 98.1%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.53 42.0 2.81e-01 89.4% 87.9%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 40.0 2.86e-01 93.6% 51.1%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 39.0 3.00e-01 89.4% 43.0%
2b30A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 45.0 3.46e-01 100.0% 78.0%
1jqgA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 2.59e-01 100.0% 62.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 38.0 2.55e-01 80.9% 36.6%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 3.66e-01 97.9% 65.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053453 386.1.1.74 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-Di19 0.77 45.0 4.29e-01 100.0% 49.1%
3188029 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 49.0 4.37e-01 76.6% 74.3%
3284031 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 43.0 2.94e-01 72.3% 16.7%
2323881 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.67 45.0 4.38e-01 72.3% 61.1%
3998053 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 48.0 4.19e-01 76.6% 74.7%
3562527 386.1.1.358 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.66 55.0 5.11e-01 93.6% 76.7%
3206206 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 46.0 4.07e-01 76.6% 74.7%
3685642 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.64 46.0 3.96e-01 76.6% 70.0%
3523119 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.64 45.0 2.76e-01 74.5% 63.0%
3738773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.64 52.0 5.05e-01 100.0% 89.1%
4547498 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 3.10e-01 85.1% 61.9%
3642272 304.24.1.17 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MTHFR_C 0.63 46.0 4.20e-01 89.4% 57.1%
5056061 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.62 52.0 3.36e-01 97.9% 66.5%
None — 0.62 48.0 2.97e-01 85.1% 24.1%
5083528 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.61 41.0 3.33e-01 70.2% 64.7%
3841972 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.61 45.0 3.27e-01 80.9% 57.1%
5082770 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.61 50.0 3.46e-01 95.7% 50.6%
3697768 872.4.1.0 ↗ a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like 0.61 46.0 4.69e-01 83.0% 93.3%
3772069 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.61 46.0 3.75e-01 83.0% 88.9%
3218069 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 44.0 3.98e-01 76.6% 61.5%
3611538 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.60 49.0 4.80e-01 100.0% 83.6%
4996288 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.60 50.0 3.78e-01 100.0% 74.8%
3480553 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.60 44.0 3.39e-01 89.4% 77.9%
4322608 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.60 48.0 4.11e-01 100.0% 54.1%
3668147 387.1.5.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Gamma-thionin 0.59 47.0 4.42e-01 93.6% 71.7%
4120485 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 42.0 2.49e-01 74.5% 32.8%
3934845 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.59 46.0 2.87e-01 85.1% 69.3%
3637401 4081.1.1.8 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.59 49.0 3.26e-01 100.0% 25.0%
3205036 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 49.0 3.21e-01 100.0% 22.4%
3590646 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.58 50.0 3.66e-01 95.7% 68.0%
3979017 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.58 41.0 3.60e-01 76.6% 58.7%
4115268 4137.1.1.1 ↗ a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.57 42.0 3.68e-01 78.7% 63.8%
3503756 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.10e-01 89.4% 94.3%
5062966 327.11.1.16 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.56 40.0 3.76e-01 100.0% 60.0%
3495764 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.56 46.0 3.25e-01 100.0% 29.2%
4284044 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.19e-01 93.6% 66.7%
3506749 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.56 49.0 3.38e-01 100.0% 73.9%
4241517 3070.1.1.6 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › TcpQ 0.55 47.0 4.01e-01 97.9% 75.0%
3418470 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.55 47.0 2.80e-01 93.6% 20.9%
3252861 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 46.0 3.12e-01 100.0% 24.2%
3597533 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.54 36.0 2.91e-01 70.2% 29.5%
3612297 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.54 46.0 2.92e-01 93.6% 32.9%
3258276 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 45.0 3.01e-01 100.0% 24.4%
3787728 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 38.0 3.28e-01 74.5% 94.3%
3907235 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 41.0 2.84e-01 97.9% 23.6%
3604611 3070.1.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.53 42.0 3.54e-01 93.6% 81.1%
4937569 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.53 39.0 3.38e-01 87.2% 49.4%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 41.0 2.90e-01 87.2% 65.6%
4970356 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.53 43.0 3.31e-01 97.9% 98.3%
5034767 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.53 42.0 3.53e-01 97.9% 96.8%
3706565 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 2.82e-01 100.0% 27.3%
3172490 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 42.0 3.02e-01 97.9% 85.8%