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HQ615693.1__AEC53215.1__SCRM01_269__00269

Bact-Vir

HQ615693.1__AEC53215.1__SCRM01_269__00269

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-75
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__01091__D3-70
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.66 36.0 2.57e-01 87.3% 19.5%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 43.0 3.56e-01 80.3% 40.7%
1vj7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 44.0 3.77e-01 80.3% 47.9%
1q8iA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.58 46.0 3.25e-01 100.0% 28.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 34.0 3.22e-01 74.6% 45.6%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 41.0 3.54e-01 83.1% 48.7%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.56 35.0 2.95e-01 100.0% 37.5%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.64e-01 76.1% 78.1%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 30.0 2.74e-01 94.4% 38.9%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.66e-01 87.3% 76.9%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 37.0 3.26e-01 70.4% 65.4%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.10e-01 80.3% 50.6%
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 35.0 2.55e-01 91.5% 23.2%
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.54 47.0 2.83e-01 100.0% 33.5%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.21e-01 87.3% 82.6%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.38e-01 83.1% 72.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.53 38.0 3.51e-01 74.6% 58.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 4.27e-01 83.1% 93.4%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.61e-01 78.9% 91.2%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.76e-01 83.1% 75.9%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 40.0 3.14e-01 83.1% 90.1%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 40.0 3.57e-01 88.7% 96.4%
3f8uB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.24e-01 78.9% 74.2%
3r7aB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 45.0 3.23e-01 100.0% 90.8%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.29e-01 74.6% 87.4%
5wy8B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.60e-01 84.5% 80.6%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 38.0 3.49e-01 78.9% 93.5%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.71e-01 95.8% 43.3%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 44.0 3.15e-01 100.0% 31.0%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 39.0 3.59e-01 87.3% 64.6%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.23e-01 98.6% 46.3%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 4.03e-01 81.7% 89.2%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 36.0 3.24e-01 77.5% 92.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961766 241.15.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M 0.72 59.0 5.03e-01 88.7% 93.0%
4641929 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.71 54.0 4.43e-01 80.3% 48.0%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 3.98e-01 85.9% 41.3%
3380327 5.1.10.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 0.64 40.0 3.60e-01 84.5% 44.0%
5019855 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 47.0 4.74e-01 80.3% 91.4%
4987915 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.61 51.0 4.28e-01 94.4% 92.8%
3964760 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.61 52.0 4.32e-01 94.4% 92.0%
5058018 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.61 50.0 4.26e-01 94.4% 94.4%
3961794 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.60 50.0 4.09e-01 93.0% 88.1%
3977177 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.60 51.0 4.26e-01 94.4% 92.7%
4646999 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 50.0 4.79e-01 95.8% 94.0%
3586018 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 32.0 2.55e-01 70.4% 25.0%
3607354 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 50.0 4.09e-01 95.8% 87.7%
5041112 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 4.47e-01 80.3% 87.1%
4978716 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.59 49.0 4.08e-01 94.4% 93.1%
2814317 331.5.1.1 ↗ a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.59 49.0 4.05e-01 94.4% 89.5%
5041795 101.25.1.0 ↗ alpha arrays › HTH › CofE insertion domain › CofE insertion domain 0.57 40.0 4.20e-01 93.0% 81.5%
3816125 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 39.0 3.02e-01 74.6% 77.7%
3861070 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.56 47.0 4.19e-01 100.0% 70.0%
5040360 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 41.0 3.74e-01 78.9% 86.3%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 47.0 3.74e-01 95.8% 84.5%
4564186 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 40.0 3.42e-01 80.3% 69.6%
3821751 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 43.0 4.16e-01 88.7% 78.8%
5081495 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.28e-01 74.6% 62.5%
3627126 2.1.1.41 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.54 37.0 3.14e-01 71.8% 65.8%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.54 45.0 4.22e-01 95.8% 87.8%
3505867 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.54 39.0 3.90e-01 77.5% 85.3%
5076824 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 40.0 2.63e-01 83.1% 30.1%
3264336 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 36.0 3.41e-01 71.8% 62.2%
3516246 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.53 43.0 3.97e-01 93.0% 90.5%
3890751 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.43e-01 73.2% 61.1%
144698 234.3.1.2 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › Colicin_E5 0.52 37.0 3.42e-01 76.1% 77.3%
3315219 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 39.0 3.65e-01 90.1% 64.4%
3228853 2.1.1.41 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.52 35.0 2.93e-01 70.4% 67.7%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 40.0 3.76e-01 88.7% 78.9%
3596522 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 43.0 3.87e-01 100.0% 92.7%
3303112 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 39.0 3.44e-01 83.1% 54.5%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.51 38.0 3.68e-01 84.5% 89.4%
1031959 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.51 38.0 3.42e-01 84.5% 57.4%
3467905 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 4.05e-01 77.5% 100.0%
3321727 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 35.0 3.56e-01 71.8% 85.7%
3962565 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 34.0 3.15e-01 71.8% 73.0%
3461166 5.1.4.414 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C 0.51 41.0 2.64e-01 94.4% 22.5%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.51 42.0 3.90e-01 100.0% 72.6%
3304867 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 36.0 2.91e-01 76.1% 65.0%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 41.0 2.77e-01 93.0% 35.6%