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HQ615693.1__AEC53224.1__SCRM01_278__00278

Bact-Vir

HQ615693.1__AEC53224.1__SCRM01_278__00278

Identity

Accession:
HQ615693 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CRM01

TaxID: 1026955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-85
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 52.0 4.44e-01 96.1% 52.8%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 54.0 4.02e-01 93.5% 47.3%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 4.76e-01 75.3% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.64e-01 88.3% 84.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.54e-01 87.0% 90.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 45.0 4.48e-01 80.5% 92.7%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.20e-01 79.2% 85.3%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 4.77e-01 96.1% 84.8%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.98e-01 83.1% 88.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.60 41.0 4.14e-01 77.9% 72.7%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.59 33.0 2.90e-01 76.6% 33.9%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 43.0 2.96e-01 77.9% 38.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.82e-01 92.2% 98.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 41.0 3.72e-01 94.8% 51.3%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.25e-01 87.0% 94.9%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.00e-01 83.1% 80.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.38e-01 87.0% 90.5%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 4.08e-01 96.1% 56.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.41e-01 89.6% 90.9%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 4.10e-01 96.1% 55.0%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.02e-01 84.4% 89.8%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.25e-01 93.5% 34.0%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 47.0 4.73e-01 90.9% 100.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 46.0 4.66e-01 90.9% 100.0%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 47.0 3.46e-01 97.4% 42.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.93e-01 81.8% 82.5%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.52e-01 83.1% 100.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 43.0 3.26e-01 83.1% 85.6%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 49.0 4.81e-01 100.0% 97.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.48e-01 96.1% 86.8%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.51e-01 87.0% 85.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 42.0 4.12e-01 84.4% 90.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 33.0 3.93e-01 75.3% 95.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 47.0 4.14e-01 100.0% 86.3%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 47.0 4.48e-01 94.8% 97.8%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 43.0 3.34e-01 88.3% 85.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.12e-01 98.7% 88.4%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.43e-01 90.9% 98.3%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.45e-01 100.0% 81.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 33.0 3.71e-01 74.0% 92.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.78e-01 81.8% 96.7%
3ivrA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 38.0 2.51e-01 79.2% 32.7%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.52 36.0 4.01e-01 72.7% 98.3%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 40.0 3.62e-01 83.1% 88.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.69e-01 94.8% 78.1%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 38.0 2.64e-01 83.1% 39.0%
5k8pD01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 39.0 2.70e-01 85.7% 40.8%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 3.93e-01 85.7% 91.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 43.0 5.16e-01 85.7% 100.0%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 43.0 4.43e-01 88.3% 66.7%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 43.0 5.13e-01 85.7% 100.0%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 43.0 5.08e-01 85.7% 100.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 46.0 5.26e-01 96.1% 100.0%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 51.0 3.76e-01 80.5% 72.3%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 42.0 5.00e-01 88.3% 100.0%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.66 48.0 5.10e-01 97.4% 90.8%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 41.0 4.95e-01 87.0% 100.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 41.0 4.89e-01 87.0% 100.0%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 44.0 4.96e-01 90.9% 98.2%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 43.0 4.92e-01 90.9% 96.4%
4170351 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 41.0 4.19e-01 88.3% 66.7%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.86e-01 92.2% 84.3%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.64 46.0 4.99e-01 81.8% 90.8%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 41.0 4.82e-01 88.3% 100.0%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 44.0 5.00e-01 94.8% 100.0%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.95e-01 88.3% 95.0%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.74e-01 90.9% 82.9%
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.82e-01 81.8% 100.0%
4380184 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.63 44.0 4.27e-01 74.0% 100.0%
4126578 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.63 45.0 5.03e-01 88.3% 100.0%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 53.0 3.78e-01 97.4% 39.6%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 52.0 4.26e-01 96.1% 50.7%
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 44.0 4.83e-01 90.9% 98.3%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.72e-01 93.5% 82.7%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.62 43.0 4.66e-01 89.6% 87.7%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.60 44.0 4.74e-01 88.3% 96.8%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.60 41.0 4.39e-01 89.6% 86.2%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.85e-01 94.8% 96.9%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.73e-01 93.5% 95.6%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.59 48.0 3.56e-01 94.8% 36.5%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 3.69e-01 93.5% 60.0%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.31e-01 85.7% 86.2%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 47.0 4.74e-01 89.6% 100.0%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.58 45.0 4.54e-01 92.2% 83.7%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.32e-01 90.9% 73.3%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 43.0 4.60e-01 90.9% 95.4%
185622 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.58 48.0 4.05e-01 96.1% 52.9%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 46.0 4.73e-01 88.3% 100.0%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.13e-01 80.5% 85.0%
4110610 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 3.47e-01 87.0% 60.5%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 45.0 4.63e-01 88.3% 100.0%
3928299 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 49.0 3.88e-01 100.0% 76.5%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.57 40.0 4.20e-01 90.9% 84.3%
5072519 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 45.0 4.61e-01 88.3% 100.0%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.56 43.0 4.32e-01 96.1% 82.5%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 43.0 4.14e-01 92.2% 73.3%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.56 46.0 4.31e-01 94.8% 78.2%
3582226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 3.61e-01 100.0% 76.2%
1144780 219.1.1.69 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.55 47.0 4.14e-01 100.0% 86.3%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 38.0 3.24e-01 71.4% 82.3%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.54 43.0 4.23e-01 93.5% 81.5%
3972292 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.54 40.0 3.95e-01 81.8% 97.6%
3516909 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 3.59e-01 97.4% 74.3%
3210421 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 37.0 2.97e-01 71.4% 80.6%
3800238 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.33e-01 100.0% 74.8%
3702536 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.34e-01 93.5% 92.4%
4011774 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 36.0 2.72e-01 72.7% 52.4%
5011920 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.08e-01 85.7% 100.0%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 35.0 3.00e-01 71.4% 82.2%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 39.0 3.93e-01 84.4% 88.7%
3413401 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.45e-01 84.4% 18.5%
3609116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.67e-01 90.9% 85.5%
3230926 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.50 34.0 2.96e-01 71.4% 80.8%