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HQ630627.1__AEH03494.1__X__00068

Bact-Vir

HQ630627.1__AEH03494.1__X__00068

Identity

Accession:
HQ630627 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-87
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.90 78.0 7.14e-01 91.3% 73.3%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.86 78.0 6.32e-01 100.0% 54.4%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.86 61.0 6.59e-01 73.9% 100.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 78.0 6.78e-01 100.0% 67.6%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.84 64.0 5.89e-01 82.6% 64.0%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 59.0 5.84e-01 73.9% 69.9%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.84 74.0 5.75e-01 94.2% 48.1%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.82 67.0 3.93e-01 87.0% 20.5%
1st6A02 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.82 75.0 5.06e-01 100.0% 68.6%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 74.0 7.15e-01 98.6% 97.4%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.82 70.0 6.77e-01 92.8% 85.7%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.81 69.0 6.01e-01 100.0% 62.3%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 72.0 7.07e-01 100.0% 94.5%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 72.0 6.17e-01 100.0% 65.1%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 71.0 6.01e-01 100.0% 64.9%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 70.0 6.62e-01 97.1% 92.6%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 64.0 6.48e-01 88.4% 92.5%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.79 63.0 6.21e-01 97.1% 83.3%
1t7sA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.78 67.0 5.41e-01 100.0% 50.4%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 63.0 6.28e-01 89.9% 87.5%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.78 58.0 5.56e-01 81.2% 71.6%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.77 53.0 6.05e-01 71.0% 100.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 65.0 6.46e-01 95.7% 89.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 68.0 6.33e-01 100.0% 81.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.77 64.0 6.21e-01 95.7% 82.1%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 66.0 4.60e-01 100.0% 28.7%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 60.0 5.83e-01 89.9% 75.6%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 61.0 6.35e-01 88.4% 95.3%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 59.0 5.38e-01 88.4% 62.4%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.76 64.0 5.93e-01 94.2% 72.2%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 62.0 6.13e-01 100.0% 85.1%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 59.0 6.15e-01 85.5% 92.2%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 65.0 5.75e-01 94.2% 66.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 61.0 5.93e-01 89.9% 80.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.76 58.0 5.35e-01 85.5% 63.7%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 58.0 6.04e-01 82.6% 92.1%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.74 56.0 5.95e-01 89.9% 95.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 56.0 5.95e-01 84.1% 98.3%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.74 55.0 4.71e-01 85.5% 49.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.74 56.0 5.72e-01 84.1% 86.2%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.73 58.0 6.08e-01 88.4% 98.4%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 62.0 5.92e-01 98.6% 82.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 62.0 5.37e-01 97.1% 60.9%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.72 62.0 5.92e-01 97.1% 100.0%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.72 57.0 5.68e-01 87.0% 82.2%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 57.0 5.65e-01 94.2% 84.5%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.72 60.0 5.55e-01 97.1% 71.1%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.72 55.0 5.68e-01 84.1% 90.6%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 6.07e-01 92.8% 98.4%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 59.0 5.31e-01 100.0% 66.3%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.70 48.0 4.87e-01 72.5% 72.1%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.69 51.0 4.77e-01 79.7% 64.4%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 50.0 5.12e-01 87.0% 79.1%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.68 59.0 5.38e-01 100.0% 74.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 55.0 4.75e-01 89.9% 87.2%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.68 62.0 4.19e-01 100.0% 33.1%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.66 49.0 3.10e-01 82.6% 14.9%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 57.0 5.01e-01 100.0% 64.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3855166 4177.1.1.12 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 0.91 85.0 5.49e-01 100.0% 25.6%
1002194 192.23.1.1 alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Rop-like 0.89 72.0 7.16e-01 85.5% 83.1%
3977409 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.88 81.0 6.38e-01 100.0% 51.1%
3924652 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.86 75.0 5.93e-01 100.0% 48.1%
3251093 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.86 79.0 6.56e-01 100.0% 60.0%
3428894 604.5.1.39 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 0.86 79.0 6.16e-01 100.0% 49.3%
3249343 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.86 79.0 5.36e-01 100.0% 31.1%
3933048 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.86 77.0 6.75e-01 98.6% 72.0%
3737723 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.85 78.0 5.42e-01 100.0% 32.9%
3831 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.85 78.0 6.78e-01 100.0% 67.6%
5000174 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.84 61.0 5.37e-01 76.8% 53.0%
3270696 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.83 76.0 6.53e-01 100.0% 65.7%
3785883 4177.1.1.97 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PF30147 0.83 75.0 5.45e-01 100.0% 38.4%
3176191 3922.1.1.242 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DDT 0.83 74.0 4.85e-01 100.0% 24.3%
3622487 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.83 75.0 6.39e-01 100.0% 63.6%
3610706 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.83 70.0 6.66e-01 89.9% 77.5%
4660205 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 74.0 5.91e-01 100.0% 51.9%
3735607 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 73.0 6.92e-01 97.1% 83.7%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.82 72.0 6.51e-01 100.0% 72.6%
3930829 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 70.0 6.86e-01 98.6% 88.0%
3701006 109.40.1.2 alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.81 61.0 5.36e-01 81.2% 55.0%
3964578 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.81 73.0 5.70e-01 100.0% 48.6%
3355246 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.81 70.0 6.65e-01 95.7% 82.5%
4234530 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 72.0 6.06e-01 100.0% 60.9%
3988454 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 69.0 6.88e-01 95.7% 92.9%
1877523 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 71.0 6.04e-01 100.0% 60.7%
3608012 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.80 69.0 6.51e-01 98.6% 78.8%
3582379 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.80 62.0 6.27e-01 85.5% 84.1%
3991599 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 69.0 6.07e-01 95.7% 67.0%
None 0.79 64.0 4.01e-01 88.4% 18.0%
3798353 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.79 70.0 5.44e-01 100.0% 48.7%
3900975 604.1.1.92 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.79 71.0 5.68e-01 100.0% 52.3%
5084060 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.79 70.0 5.37e-01 100.0% 78.1%
3877354 3291.1.1.14 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › LAP2alpha 0.79 70.0 5.07e-01 100.0% 35.9%
3550353 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.78 62.0 6.36e-01 87.0% 92.3%
3571433 3939.1.1.220 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › KIF21A 0.78 69.0 5.28e-01 100.0% 43.1%
3723174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 66.0 6.46e-01 95.7% 88.0%
3170491 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 68.0 4.79e-01 100.0% 45.0%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 63.0 4.86e-01 98.6% 41.1%
3382780 2006.1.1.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.76 67.0 4.26e-01 100.0% 20.3%
3742650 1072.1.1.1 alpha bundles › Hsp90 co-chaperone Cdc37 N-terminal domain › Hsp90 co-chaperone Cdc37 N-terminal domain › Hsp90 co-chaperone Cdc37 N-terminal domain › CDC37_N 0.75 65.0 5.44e-01 100.0% 55.8%
4959775 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.75 66.0 4.25e-01 98.6% 21.9%
5080738 192.15.1.47 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GvpK 0.75 58.0 5.42e-01 85.5% 68.2%
3740547 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.74 64.0 5.60e-01 100.0% 69.1%
4959086 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 62.0 6.03e-01 97.1% 85.3%
4025445 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 64.0 5.69e-01 100.0% 70.0%
3748412 604.1.1.92 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.72 62.0 5.33e-01 100.0% 60.0%
3641196 5041.1.1.27 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PRA1 0.68 54.0 4.60e-01 87.0% 57.4%
5000824 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.68 61.0 4.75e-01 100.0% 49.0%
3750377 605.1.1.254 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 0.67 56.0 5.45e-01 98.6% 88.7%
4352674 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.65 54.0 4.85e-01 98.6% 66.7%
3248074 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 52.0 4.10e-01 94.2% 40.6%
4086475 3755.3.1.466 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC 0.63 53.0 4.16e-01 95.7% 42.6%