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HQ630627.1__AEH03531.1__X__00105
Bact-VirHQ630627.1__AEH03531.1__X__00105
Identity
- Accession:
- HQ630627 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Miltoncavirus›
Pseudomonas_phage_PhiPA3
TaxID: 998086
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-136
Domain cluster:
rep: MK552327.1__QBJ02642.1__PSA21_114__00114__D10-126
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dnhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.74 | 31.0 | 3.55e-01 | 91.9% | 50.5% |
| 1s79A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.71 | 30.0 | 3.44e-01 | 91.9% | 51.5% |
| 1x5oA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 30.0 | 3.70e-01 | 91.9% | 61.6% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 29.0 | 3.65e-01 | 90.4% | 62.2% |
| 5mmjv00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.68 | 30.0 | 3.80e-01 | 91.9% | 67.5% |
| 2mzqA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.68 | 29.0 | 3.36e-01 | 91.9% | 52.5% |
| 4qu7A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 29.0 | 3.74e-01 | 91.9% | 67.9% |
| 4e8uA00 | 3.30.70.2890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain | 0.66 | 34.0 | 3.20e-01 | 91.9% | 40.4% |
| 7csxA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 29.0 | 3.78e-01 | 91.9% | 73.6% |
| 2dgxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 30.0 | 3.73e-01 | 90.4% | 68.8% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.65 | 29.0 | 4.23e-01 | 90.4% | 94.9% |
| 5w0hA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 30.0 | 3.72e-01 | 91.9% | 70.0% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 28.0 | 3.54e-01 | 90.4% | 67.1% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 28.0 | 3.34e-01 | 89.6% | 58.4% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 27.0 | 3.45e-01 | 89.6% | 65.3% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 27.0 | 3.49e-01 | 91.1% | 67.9% |
| 2mkcA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 28.0 | 3.05e-01 | 91.9% | 46.6% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 29.0 | 3.35e-01 | 91.9% | 58.5% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.62 | 26.0 | 3.43e-01 | 91.9% | 70.4% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 33.0 | 3.79e-01 | 90.4% | 67.6% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 33.0 | 3.90e-01 | 91.9% | 75.3% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 24.0 | 3.22e-01 | 90.4% | 64.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.61 | 35.0 | 4.06e-01 | 77.0% | 76.8% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 26.0 | 3.12e-01 | 90.4% | 56.7% |
| 6hhnA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 3.46e-01 | 89.6% | 64.1% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 30.0 | 3.44e-01 | 93.3% | 63.9% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 29.0 | 3.50e-01 | 91.9% | 69.0% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 29.0 | 3.37e-01 | 91.9% | 62.2% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 27.0 | 3.27e-01 | 91.9% | 63.9% |
| 7wezA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 27.0 | 3.37e-01 | 91.9% | 70.7% |
| 1x8dA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 30.0 | 3.41e-01 | 91.9% | 63.9% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 27.0 | 3.17e-01 | 91.1% | 59.6% |
| 1wjwA01 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.58 | 31.0 | 3.79e-01 | 91.9% | 80.0% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 27.0 | 3.34e-01 | 91.9% | 69.6% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 3.52e-01 | 73.3% | 95.8% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 29.0 | 3.39e-01 | 93.3% | 67.4% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 26.0 | 3.26e-01 | 91.9% | 70.3% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 27.0 | 3.20e-01 | 91.9% | 63.6% |
| 1ej6A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 27.0 | 3.14e-01 | 91.9% | 63.2% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 28.0 | 3.14e-01 | 93.3% | 61.0% |
| 2ghpA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 23.0 | 2.92e-01 | 83.7% | 64.6% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 27.0 | 3.17e-01 | 89.6% | 68.5% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 3.11e-01 | 70.4% | 81.3% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 3.12e-01 | 91.9% | 64.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3235420 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.71 | 31.0 | 3.46e-01 | 91.9% | 50.5% |
| 3634158 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.70 | 30.0 | 3.55e-01 | 91.9% | 55.8% |
| 3511886 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.70 | 30.0 | 2.94e-01 | 91.9% | 36.6% |
| 3173413 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.70 | 29.0 | 3.65e-01 | 90.4% | 62.4% |
| 4491144 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.70 | 33.0 | 3.82e-01 | 91.9% | 61.1% |
| 3474446 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.69 | 30.0 | 3.84e-01 | 91.9% | 67.9% |
| 3817212 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 30.0 | 3.96e-01 | 91.9% | 75.7% |
| 3194118 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.68 | 30.0 | 2.39e-01 | 91.9% | 21.6% |
| 3615190 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 34.0 | 3.64e-01 | 89.6% | 54.2% |
| 3182321 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.67 | 28.0 | 3.27e-01 | 91.9% | 52.0% |
| 3595233 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 30.0 | 3.55e-01 | 91.9% | 60.0% |
| 3806911 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.64 | 31.0 | 3.70e-01 | 91.9% | 66.7% |
| 3426902 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 29.0 | 3.36e-01 | 92.6% | 57.9% |
| 3798267 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.64 | 36.0 | 3.36e-01 | 91.9% | 43.6% |
| 4948793 | 304.134.1.3 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › PF26798 | 0.64 | 29.0 | 3.62e-01 | 91.9% | 68.8% |
| 3595845 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.64 | 31.0 | 3.56e-01 | 91.9% | 61.0% |
| 3650582 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 27.0 | 3.69e-01 | 90.4% | 75.4% |
| 3609622 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.64 | 29.0 | 3.36e-01 | 91.9% | 57.0% |
| 5040343 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.63 | 26.0 | 3.75e-01 | 89.6% | 83.3% |
| 5004700 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 26.0 | 3.33e-01 | 90.4% | 64.6% |
| 4182726 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.62 | 28.0 | 3.36e-01 | 92.6% | 60.7% |
| 3211458 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.62 | 35.0 | 3.90e-01 | 80.7% | 68.2% |
| 3209679 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 31.0 | 3.63e-01 | 91.9% | 65.3% |
| 5081638 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.61 | 31.0 | 4.12e-01 | 94.1% | 91.4% |
| 3514492 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 26.0 | 2.93e-01 | 91.9% | 48.6% |
| 3291362 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.61 | 43.0 | 3.20e-01 | 71.1% | 88.9% |
| 4017550 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 28.0 | 3.29e-01 | 87.4% | 58.9% |
| 3839866 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.61 | 26.0 | 3.16e-01 | 91.1% | 57.8% |
| 3396694 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.60 | 29.0 | 3.42e-01 | 92.6% | 64.4% |
| 3375968 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.60 | 31.0 | 2.89e-01 | 91.9% | 37.9% |
| 4248927 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.60 | 43.0 | 4.50e-01 | 91.9% | 80.8% |
| 4997562 | 101.1.9.20 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 | 0.58 | 27.0 | 3.32e-01 | 91.9% | 68.2% |
| 4240079 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.58 | 29.0 | 3.29e-01 | 91.9% | 61.0% |
| 4954601 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.58 | 26.0 | 3.31e-01 | 91.9% | 70.7% |
| 353436 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.57 | 28.0 | 3.15e-01 | 92.6% | 56.5% |
| None | — | 0.56 | 35.0 | 3.21e-01 | 91.9% | 48.2% | |
| 3967987 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 29.0 | 3.14e-01 | 88.1% | 57.3% |
| 3989547 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 41.0 | 4.26e-01 | 91.9% | 82.4% |
| None | — | 0.56 | 34.0 | 3.40e-01 | 91.9% | 56.6% | |
| 3701068 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 26.0 | 3.18e-01 | 91.9% | 68.8% |
| 4036555 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 24.0 | 3.05e-01 | 91.1% | 68.8% |
| 3734404 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.53 | 31.0 | 3.94e-01 | 79.3% | 100.0% |
| 3726634 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 23.0 | 2.93e-01 | 91.9% | 68.8% |