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HQ630627.1__AEH03676.1__X__00250

Bact-Vir

HQ630627.1__AEH03676.1__X__00250

Identity

Accession:
HQ630627 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miltoncavirus› Pseudomonas_phage_PhiPA3

TaxID: 998086

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-156
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 5.47e-01 79.5% 77.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 48.0 5.32e-01 78.3% 77.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 45.0 5.67e-01 73.5% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 49.0 5.63e-01 97.6% 94.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.76e-01 78.3% 90.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 5.45e-01 74.7% 100.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.43e-01 81.9% 82.9%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.28e-01 75.9% 97.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.62e-01 78.3% 71.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.07e-01 83.1% 81.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 4.80e-01 78.3% 78.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.21e-01 77.1% 98.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.88e-01 75.9% 98.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 3.71e-01 75.9% 49.6%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.47e-01 86.7% 78.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.63e-01 75.9% 92.2%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 42.0 3.86e-01 72.3% 84.1%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 43.0 3.74e-01 78.3% 61.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 38.0 3.33e-01 78.3% 44.8%
4bwcA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.57 25.0 3.05e-01 73.5% 58.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.19e-01 77.1% 89.3%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 39.0 3.91e-01 97.6% 74.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.44e-01 84.3% 55.0%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 39.0 3.40e-01 81.9% 51.6%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.34e-01 78.3% 82.7%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.52 36.0 2.90e-01 72.3% 78.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.43e-01 95.2% 85.3%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.07e-01 74.7% 79.2%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 5.33e-01 86.7% 64.2%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.78 52.0 5.65e-01 78.3% 81.4%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.78 54.0 5.83e-01 78.3% 84.3%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 56.0 6.25e-01 81.9% 95.4%
3457106 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 54.0 6.07e-01 81.9% 95.4%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.75 50.0 5.61e-01 78.3% 87.7%
4105328 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.73 48.0 5.39e-01 81.9% 86.2%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.68e-01 79.5% 85.3%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.20e-01 79.5% 70.0%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.83e-01 78.3% 95.3%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.73 48.0 5.07e-01 81.9% 74.7%
3393347 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 52.0 5.11e-01 95.2% 68.9%
146236 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 49.0 4.48e-01 78.3% 53.7%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 67.0 5.41e-01 100.0% 62.0%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 67.0 5.62e-01 100.0% 63.0%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.72 51.0 5.36e-01 78.3% 81.3%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 51.0 4.20e-01 75.9% 41.3%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.72 53.0 5.06e-01 77.1% 71.6%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 53.0 5.59e-01 78.3% 88.0%
3723175 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 53.0 5.16e-01 78.3% 74.4%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.71 53.0 3.91e-01 100.0% 31.4%
3427504 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.70 53.0 5.70e-01 78.3% 100.0%
3935507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.09e-01 81.9% 74.0%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.62e-01 97.6% 86.3%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.22e-01 88.0% 80.0%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.70 53.0 5.73e-01 79.5% 95.7%
3424637 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.69 51.0 4.92e-01 78.3% 88.4%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 63.0 4.87e-01 97.6% 59.4%
3673944 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 63.0 5.14e-01 100.0% 62.4%
3853153 4.1.1.134 ↗ beta barrels › SH3 › SH3 › SH3 › MUM1-like_PWWP 0.69 60.0 5.02e-01 96.4% 57.8%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 51.0 5.53e-01 89.2% 92.9%
3823780 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 52.0 5.43e-01 86.7% 88.0%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 53.0 5.62e-01 81.9% 90.7%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 62.0 5.29e-01 100.0% 69.8%
3700378 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.13e-01 77.1% 95.0%
3702177 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.75e-01 79.5% 88.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.27e-01 97.6% 39.1%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.93e-01 78.3% 81.2%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 4.44e-01 100.0% 50.0%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.98e-01 80.7% 80.0%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.29e-01 80.7% 55.2%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 49.0 5.16e-01 79.5% 93.3%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 45.0 4.92e-01 79.5% 87.1%
3363751 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.64 48.0 4.46e-01 79.5% 84.8%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.71e-01 79.5% 76.5%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 46.0 4.86e-01 78.3% 84.0%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.64 48.0 4.77e-01 79.5% 80.0%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.63 48.0 5.01e-01 79.5% 94.7%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.63 48.0 4.25e-01 81.9% 68.3%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.91e-01 100.0% 92.0%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.61 54.0 4.36e-01 100.0% 92.1%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.99e-01 81.9% 95.7%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.84e-01 75.9% 100.0%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.73e-01 95.2% 76.0%
3448216 4.1.1.421 ↗ beta barrels › SH3 › SH3 › SH3 › ARF_AD 0.60 45.0 4.86e-01 79.5% 95.7%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 42.0 4.72e-01 74.7% 96.9%
3626691 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 51.0 4.76e-01 95.2% 77.0%
3576437 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.80e-01 95.2% 78.0%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.22e-01 79.5% 81.9%
3750217 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.58 43.0 3.45e-01 79.5% 60.0%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.46e-01 77.1% 85.3%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 49.0 4.48e-01 92.8% 70.0%
3541772 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 3.65e-01 78.3% 72.3%
3618259 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.48e-01 95.2% 75.2%
3590884 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.56 41.0 3.52e-01 78.3% 48.9%
3992026 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 39.0 4.25e-01 97.6% 96.9%
3410884 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 37.0 4.06e-01 95.2% 92.2%
3390503 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 37.0 4.09e-01 94.0% 92.3%
3402874 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 35.0 3.89e-01 91.6% 86.2%
3520226 101.1.1.388 ↗ alpha arrays › HTH › HTH › Three-helical HTH › FLYWCH 0.53 41.0 3.55e-01 97.6% 53.8%
3490032 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.52 39.0 3.41e-01 78.3% 62.6%
3517453 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 40.0 4.10e-01 95.2% 87.5%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.52 46.0 4.47e-01 100.0% 90.0%
D2 medium residues 14-67
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g7rA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 45.0 3.99e-01 81.5% 50.0%
6infA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 43.0 2.98e-01 83.3% 22.7%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 48.0 3.05e-01 88.9% 33.2%
1cukA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 37.0 3.36e-01 70.4% 92.1%
4dimA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.99e-01 75.9% 52.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4660205 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 57.0 4.19e-01 94.4% 99.3%
3689819 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.63 53.0 4.08e-01 100.0% 65.2%
4235299 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.55 50.0 3.43e-01 100.0% 97.8%
3233668 108.1.1.156 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › ANIS5_cation-bd 0.54 42.0 4.17e-01 94.4% 83.3%