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HQ630627.1__AEH03679.1__X__00253

Bact-Vir

HQ630627.1__AEH03679.1__X__00253

Identity

Accession:
HQ630627 ↗
Kingdom:
phage

Quality

67.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miltoncavirus› Pseudomonas_phage_PhiPA3

TaxID: 998086

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 99-156
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.72 55.0 4.31e-01 100.0% 39.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 46.0 4.27e-01 100.0% 60.0%
2w9mA04 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.64 42.0 4.37e-01 93.1% 72.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.61 48.0 4.07e-01 100.0% 50.0%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.61 43.0 3.72e-01 98.3% 46.7%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 4.01e-01 100.0% 61.5%
4a17H02 3.30.60.300 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 24.0 2.89e-01 89.7% 56.4%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 3.65e-01 98.3% 56.4%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 48.0 4.78e-01 100.0% 96.6%
3au2A04 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.57 45.0 4.39e-01 100.0% 76.9%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 3.84e-01 100.0% 53.7%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.00e-01 98.3% 56.1%
2qezA01 2.30.170.30 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › ethanolamine ammonia-lyase heavy chain domain like 0.56 36.0 3.78e-01 86.2% 73.1%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 46.0 3.54e-01 100.0% 39.9%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.55 45.0 4.05e-01 98.3% 65.0%
5hr9A02 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.54 45.0 4.22e-01 100.0% 75.4%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 43.0 4.04e-01 100.0% 98.7%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.51 44.0 2.93e-01 98.3% 33.8%
4p4mA03 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.51 46.0 3.90e-01 98.3% 79.3%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.51 40.0 4.22e-01 94.8% 100.0%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.04e-01 89.7% 38.0%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 40.0 4.00e-01 94.8% 87.1%
2bcqA04 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.50 45.0 4.30e-01 100.0% 97.0%
1bpeA04 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.50 44.0 4.40e-01 96.6% 98.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953795 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.76 65.0 4.62e-01 100.0% 32.4%
3954913 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 64.0 5.05e-01 100.0% 47.8%
5022655 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.62 52.0 4.16e-01 100.0% 60.2%
3619710 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 43.0 3.18e-01 75.9% 38.0%
3263125 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 49.0 3.60e-01 100.0% 76.7%
4999035 873.1.1.13 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.59 50.0 3.58e-01 100.0% 44.6%
5033958 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.58 46.0 3.67e-01 100.0% 42.5%
3594093 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 51.0 3.44e-01 98.3% 40.5%
3998708 5104.1.1.2 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.58 42.0 3.15e-01 77.6% 39.3%
4928793 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.58 49.0 3.60e-01 96.6% 35.6%
3598925 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.57 49.0 3.85e-01 100.0% 50.8%
3614055 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 46.0 3.23e-01 96.6% 28.6%
5062173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.48e-01 87.9% 58.3%
3453703 316.1.1.24 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.54 48.0 3.28e-01 98.3% 31.2%
3494855 4970.1.1.23 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › ASC 0.54 45.0 3.72e-01 100.0% 91.3%
3990856 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 46.0 3.52e-01 100.0% 45.0%
1952984 316.1.1.23 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.53 44.0 3.26e-01 100.0% 53.7%
1952982 316.1.1.4 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2,DNA_pol_B_thumb 0.53 43.0 3.23e-01 100.0% 53.4%
3726426 316.1.1.24 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.52 47.0 3.16e-01 100.0% 29.5%
4949960 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.23e-01 81.0% 84.0%
3714444 316.1.1.23 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.51 45.0 3.38e-01 98.3% 56.6%
5032434 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.50 43.0 3.57e-01 100.0% 62.7%
3781580 5104.1.1.2 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.50 36.0 2.99e-01 81.0% 45.4%