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HQ630627.1__AEH03701.1__X__00275

Bact-Vir

HQ630627.1__AEH03701.1__X__00275

Identity

Accession:
HQ630627 ↗
Kingdom:
phage

Quality

47.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miltoncavirus› Pseudomonas_phage_PhiPA3

TaxID: 998086

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 43.0 3.59e-01 76.7% 51.5%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 44.0 4.32e-01 79.5% 92.3%
3qvsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 40.0 2.67e-01 75.3% 18.9%
3m1yA02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.55 37.0 4.09e-01 82.2% 91.2%
1gkuB08 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.55 48.0 4.12e-01 100.0% 80.7%
1v9mA01 1.10.132.50 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › ATP synthase (C/AC39) subunit, domain 3 0.55 42.0 3.70e-01 86.3% 79.1%
1lqsL01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 46.0 4.23e-01 100.0% 72.0%
2hgkA01 1.20.1440.40 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like 0.54 45.0 4.12e-01 100.0% 88.6%
1bbnA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 45.0 3.78e-01 100.0% 54.9%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.52 40.0 3.95e-01 97.3% 79.2%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 42.0 3.73e-01 95.9% 78.4%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.51 43.0 3.35e-01 94.5% 65.9%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.51 39.0 3.10e-01 83.6% 50.6%
1p91B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.89e-01 93.2% 71.3%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.01e-01 90.4% 69.3%
12asA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 41.0 2.79e-01 95.9% 77.1%
2pziA04 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 43.0 3.29e-01 97.3% 94.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021741 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 45.0 4.60e-01 100.0% 71.4%
4947200 7536.1.1.1 ↗ a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.63 54.0 3.84e-01 100.0% 44.0%
5036464 7536.1.1.1 ↗ a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.63 54.0 3.82e-01 100.0% 43.5%
4402712 7011.1.1.1 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.62 48.0 3.08e-01 87.7% 17.5%
5055524 7536.1.1.1 ↗ a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.62 53.0 3.73e-01 100.0% 42.7%
3582590 3291.1.1.9 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.57 40.0 3.47e-01 75.3% 84.2%
4343390 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.56 48.0 2.85e-01 100.0% 60.9%
3235421 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.53 36.0 3.24e-01 100.0% 48.2%
3223860 2484.1.1.319 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF26742 0.53 45.0 2.85e-01 100.0% 27.5%
4068922 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.52 42.0 3.80e-01 90.4% 94.3%
3592248 2003.4.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes 0.52 37.0 2.51e-01 76.7% 23.5%
3526616 109.4.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3535 0.52 42.0 2.67e-01 100.0% 15.7%
5078948 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.51 38.0 2.69e-01 80.8% 43.0%
3506381 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 35.0 2.73e-01 76.7% 66.7%
3878577 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 35.0 3.43e-01 93.2% 65.9%
D2 high residues 99-192
PDB