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HQ630627.1__AEH03781.1__X__00355

Bact-Vir

HQ630627.1__AEH03781.1__X__00355

Identity

Accession:
HQ630627 ↗
Kingdom:
phage

Quality

56.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miltoncavirus› Pseudomonas_phage_PhiPA3

TaxID: 998086

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-74
PDB
D2 high residues 92-183
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 41.0 3.69e-01 85.9% 47.2%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.64 43.0 4.28e-01 91.3% 67.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.75e-01 85.9% 96.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 36.0 4.56e-01 75.0% 100.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.53e-01 87.0% 92.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.58e-01 83.7% 98.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 33.0 4.23e-01 79.3% 100.0%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.61 45.0 3.57e-01 87.0% 37.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.33e-01 88.0% 87.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.08e-01 91.3% 82.8%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.49e-01 89.1% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 4.28e-01 84.8% 90.5%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 30.0 3.32e-01 83.7% 59.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.40e-01 94.6% 91.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.56e-01 91.3% 98.5%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 34.0 3.52e-01 73.9% 59.6%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 39.0 3.91e-01 88.0% 67.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 31.0 3.67e-01 81.5% 75.8%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.84e-01 88.0% 60.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.67e-01 89.1% 51.0%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 44.0 3.75e-01 85.9% 50.0%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 36.0 3.42e-01 76.1% 54.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.06e-01 87.0% 75.8%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.41e-01 90.2% 88.1%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.88e-01 82.6% 73.6%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.72e-01 100.0% 43.1%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.55 36.0 3.64e-01 83.7% 65.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 33.0 3.90e-01 75.0% 91.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.15e-01 90.2% 85.5%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 47.0 4.25e-01 95.7% 77.4%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.72e-01 96.7% 97.4%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.63e-01 100.0% 43.3%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.44e-01 94.6% 45.1%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 36.0 3.80e-01 91.3% 79.7%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 37.0 3.82e-01 82.6% 76.5%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.52e-01 83.7% 77.3%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 42.0 3.94e-01 100.0% 68.6%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 45.0 3.05e-01 100.0% 72.3%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.97e-01 89.1% 71.4%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 41.0 3.91e-01 100.0% 71.1%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.14e-01 97.8% 81.0%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.67e-01 88.0% 98.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 39.0 3.63e-01 83.7% 73.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.81e-01 79.3% 83.2%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.73e-01 79.3% 86.0%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.87e-01 97.8% 86.9%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 34.0 3.53e-01 83.7% 74.1%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.62e-01 88.0% 70.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.50 35.0 3.31e-01 82.6% 60.6%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 40.0 3.37e-01 90.2% 55.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.80e-01 87.0% 83.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 39.0 5.07e-01 82.6% 100.0%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.64 42.0 4.57e-01 87.0% 81.3%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 38.0 4.65e-01 79.3% 100.0%
4431199 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.63 45.0 3.52e-01 75.0% 92.3%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 37.0 4.60e-01 81.5% 100.0%
4025326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.53e-01 77.2% 85.7%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.57e-01 80.4% 100.0%
3924213 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 40.0 3.97e-01 84.8% 63.2%
3622052 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 39.0 4.03e-01 83.7% 68.2%
3707634 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 37.0 4.52e-01 83.7% 100.0%
4927532 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.61 46.0 4.14e-01 84.8% 58.4%
3798859 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 38.0 3.88e-01 84.8% 64.4%
3195050 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 39.0 3.93e-01 84.8% 64.2%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 36.0 4.27e-01 91.3% 91.7%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 40.0 4.00e-01 87.0% 66.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.13e-01 85.9% 71.1%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 3.70e-01 71.7% 63.5%
4982722 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.60 46.0 4.79e-01 85.9% 89.4%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.01e-01 85.9% 71.8%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.59 40.0 4.28e-01 90.2% 82.5%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.58 38.0 3.92e-01 88.0% 70.6%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 38.0 3.88e-01 84.8% 67.8%
3562174 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 37.0 3.65e-01 84.8% 60.0%
5078464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 31.0 3.86e-01 71.7% 100.0%
4521227 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.58 41.0 3.87e-01 90.2% 60.0%
3451175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 4.25e-01 71.7% 100.0%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.85e-01 88.0% 62.9%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.25e-01 89.1% 90.0%
4398032 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.58 41.0 3.84e-01 90.2% 60.0%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 3.78e-01 83.7% 65.3%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.27e-01 87.0% 91.4%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.57 41.0 3.92e-01 89.1% 63.6%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.57 41.0 3.90e-01 89.1% 63.6%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.57 38.0 3.98e-01 82.6% 75.3%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.56 40.0 4.11e-01 91.3% 80.0%
4234915 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 41.0 3.88e-01 89.1% 62.6%
4156970 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 41.0 3.78e-01 90.2% 59.2%
4011774 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 40.0 3.11e-01 75.0% 52.9%
4646862 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 40.0 3.86e-01 90.2% 63.6%
4278559 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 41.0 3.92e-01 91.3% 65.5%
4118973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 41.0 3.76e-01 90.2% 59.2%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.56 40.0 4.46e-01 88.0% 98.6%
4147685 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 41.0 3.92e-01 90.2% 66.4%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.55 37.0 3.64e-01 85.9% 64.0%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.55 39.0 4.27e-01 87.0% 98.6%
3259547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.55e-01 89.1% 57.4%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.54 39.0 4.16e-01 90.2% 87.7%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 34.0 3.89e-01 85.9% 96.7%
3951474 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.54 46.0 3.58e-01 100.0% 41.1%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.89e-01 87.0% 81.2%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.54 37.0 3.96e-01 87.0% 82.5%
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.53 39.0 4.17e-01 93.5% 91.3%
3484214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.60e-01 89.1% 60.7%
3740204 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.53 39.0 4.09e-01 89.1% 87.1%
4358801 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.53 43.0 4.09e-01 87.0% 97.3%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 37.0 3.63e-01 87.0% 67.0%
4218574 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 38.0 3.84e-01 85.9% 74.7%
3300738 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 43.0 3.64e-01 88.0% 71.3%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.52 43.0 4.48e-01 98.9% 100.0%
3636432 4.1.1.314 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like 0.52 43.0 3.13e-01 88.0% 52.5%
3202614 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.52 43.0 2.86e-01 88.0% 36.2%
3188774 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.52 43.0 2.91e-01 88.0% 39.0%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.51 37.0 4.01e-01 92.4% 94.7%
3841110 4.1.1.408 ↗ beta barrels › SH3 › SH3 › SH3 › SHCBP_N 0.51 42.0 3.74e-01 90.2% 77.7%
4559454 4.1.3.2 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › SHCBP_N 0.50 42.0 3.64e-01 90.2% 72.1%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.50 40.0 3.69e-01 90.2% 77.0%
D3 medium residues 201-272
PDB