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HQ632825.1__AGN12301.1__PRTG_00148__00143
Bact-VirHQ632825.1__AGN12301.1__PRTG_00148__00143
Identity
- Accession:
- HQ632825 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Salacisavirus›
Prochlorococcus_phage_P-SSM5
TaxID: 536454
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 92-201
Domain cluster:
rep: NC_006883.2__YP_214260.1__PSSM2_028__00024__D138-240
D2
high
residues 355-462
Domain cluster:
rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 34.9 | 2.00e-08 | 52.8% | 69.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 63.0 | 5.43e-01 | 100.0% | 81.4% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 29.0 | 3.22e-01 | 93.5% | 57.0% |
| 4i98C01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 26.0 | 3.04e-01 | 95.4% | 68.0% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.51 | 18.0 | 3.08e-01 | 92.6% | 97.2% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 40.0 | 3.61e-01 | 100.0% | 62.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033696 | 3240.1.1.0 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein | 0.68 | 58.0 | 5.56e-01 | 100.0% | 80.8% |
| 4002410 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 32.0 | 2.90e-01 | 100.0% | 36.7% |
| 3622481 | 604.29.1.1 ↗ | alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N | 0.57 | 32.0 | 3.18e-01 | 98.1% | 51.3% |
| 3712081 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 35.0 | 3.48e-01 | 100.0% | 60.9% |
| 5029669 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 37.0 | 3.60e-01 | 100.0% | 60.8% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 34.0 | 3.41e-01 | 100.0% | 58.3% |
| 3785619 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 38.0 | 3.75e-01 | 100.0% | 67.0% |
| 4940513 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.54 | 26.0 | 2.86e-01 | 93.5% | 53.3% |
| 3406351 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 35.0 | 3.57e-01 | 100.0% | 67.3% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 31.0 | 3.60e-01 | 95.4% | 83.8% |
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 35.0 | 3.35e-01 | 100.0% | 56.9% |
| 5020745 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 27.0 | 2.91e-01 | 97.2% | 57.9% |
| 3614646 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 46.0 | 4.05e-01 | 100.0% | 68.4% |
| 3394225 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 34.0 | 3.40e-01 | 100.0% | 64.3% |
D3
medium
residues 1-88_205-252
Domain cluster:
rep: IMGVR_UViG_2660238813_000001-2660238813-2663687523__D440-569
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.82 | 71.0 | 7.20e-01 | 100.0% | 91.1% |
| 3ntnB01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.76 | 72.0 | 6.68e-01 | 100.0% | 91.5% |
| 1thjA00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 69.0 | 5.90e-01 | 100.0% | 85.9% |
| 3tv0A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.73 | 64.0 | 6.35e-01 | 93.4% | 95.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4438061 | 208.1.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 | 0.79 | 74.0 | 6.37e-01 | 100.0% | 80.3% |
| 4397629 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.78 | 73.0 | 5.86e-01 | 100.0% | 72.8% |
| 2874693 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.77 | 59.0 | 6.28e-01 | 79.4% | 91.7% |
| 4990022 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.76 | 61.0 | 6.64e-01 | 84.6% | 99.1% |
| 5068063 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.76 | 60.0 | 6.47e-01 | 82.4% | 100.0% |
| 5050347 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.75 | 61.0 | 6.41e-01 | 85.3% | 100.0% |
| 3511243 | 208.1.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 | 0.68 | 62.0 | 6.09e-01 | 98.5% | 99.3% |
| 3182022 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.64 | 57.0 | 4.98e-01 | 95.6% | 73.9% |
| 3693046 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.63 | 57.0 | 4.94e-01 | 98.5% | 81.0% |
D4
medium
residues 253-331
Domain cluster:
rep: KJ528544.1__AHZ10892.1__WP2_20__00020__D418-502
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.71 | 63.0 | 5.17e-01 | 94.9% | 74.1% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.69 | 60.0 | 4.53e-01 | 94.9% | 41.3% |
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.67 | 59.0 | 4.60e-01 | 94.9% | 46.8% |
| 3bfpA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.66 | 58.0 | 5.08e-01 | 97.5% | 72.3% |
| 3f1xA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 54.0 | 5.11e-01 | 92.4% | 75.8% |
| 8gppA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 56.0 | 4.28e-01 | 96.2% | 59.1% |
| 3d98A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.63 | 55.0 | 4.42e-01 | 96.2% | 64.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033410 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.71 | 59.0 | 5.43e-01 | 100.0% | 71.0% |
| 5024410 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.71 | 57.0 | 5.10e-01 | 100.0% | 61.4% |
| 3982518 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.69 | 60.0 | 4.63e-01 | 93.7% | 45.6% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.68 | 60.0 | 4.66e-01 | 94.9% | 47.7% |
| 4876297 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.67 | 55.0 | 5.29e-01 | 93.7% | 78.7% |
| None | — | 0.67 | 60.0 | 4.48e-01 | 97.5% | 54.6% | |
| 4029128 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.67 | 57.0 | 5.10e-01 | 93.7% | 84.5% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.67 | 59.0 | 4.42e-01 | 93.7% | 61.1% |
| 5080668 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.65 | 56.0 | 4.54e-01 | 93.7% | 69.0% |
| 3982199 | 208.1.1.8 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › B_solenoid_ydck | 0.64 | 54.0 | 4.48e-01 | 92.4% | 67.6% |
| 3261694 | 208.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Fucokinase | 0.61 | 54.0 | 3.92e-01 | 100.0% | 72.4% |
| 4411656 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 52.0 | 4.47e-01 | 100.0% | 99.2% |