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HQ632860.1__AGN51439.1__VPJG_00075__00075
Bact-VirHQ632860.1__AGN51439.1__VPJG_00075__00075
Identity
- Accession:
- HQ632860 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-66
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.61 | 42.0 | 2.62e-01 | 78.8% | 12.2% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 3.77e-01 | 92.3% | 53.4% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 3.62e-01 | 90.4% | 46.4% |
| 7lzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.33e-01 | 80.8% | 54.4% |
| 4a4aA04 | 1.20.120.670 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase | 0.53 | 37.0 | 2.36e-01 | 75.0% | 34.5% |
| 2qxfA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 45.0 | 3.11e-01 | 100.0% | 43.8% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.51 | 40.0 | 3.55e-01 | 94.2% | 65.1% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.51 | 40.0 | 3.50e-01 | 94.2% | 96.6% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 39.0 | 3.06e-01 | 90.4% | 90.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029778 | 101.1.2.43 ↗ | alpha arrays › HTH › HTH › winged helix domain › Pox_D5 | 0.74 | 57.0 | 4.78e-01 | 84.6% | 64.4% |
| 3498779 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.74 | 57.0 | 4.91e-01 | 86.5% | 69.4% |
| 3840949 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.69 | 58.0 | 3.94e-01 | 96.2% | 27.2% |
| 3331542 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.67 | 56.0 | 3.76e-01 | 96.2% | 26.8% |
| 3381057 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.67 | 56.0 | 3.76e-01 | 96.2% | 26.8% |
| 4023077 | 2499.1.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like | 0.65 | 46.0 | 2.91e-01 | 76.9% | 25.0% |
| 4013126 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.61 | 39.0 | 3.31e-01 | 100.0% | 36.7% |
| 4025956 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 50.0 | 3.42e-01 | 98.1% | 25.7% |
| 3202208 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 43.0 | 3.07e-01 | 80.8% | 44.7% |
| 3990267 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 40.0 | 2.70e-01 | 76.9% | 26.2% |
| 3580689 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.56 | 40.0 | 3.51e-01 | 86.5% | 52.0% |
| 3311607 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 36.0 | 2.89e-01 | 76.9% | 30.9% |
| 4342897 | 589.1.1.2 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 | 0.55 | 40.0 | 2.91e-01 | 82.7% | 25.0% |
| 5013990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 3.56e-01 | 98.1% | 45.0% |
| 3411457 | 109.4.1.360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Spatacsin_C | 0.54 | 39.0 | 2.25e-01 | 76.9% | 17.3% |
| 4946546 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.53 | 41.0 | 2.67e-01 | 88.5% | 98.6% |
| 4069824 | 101.1.9.20 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 | 0.53 | 42.0 | 3.67e-01 | 92.3% | 70.6% |
| 1504755 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.52 | 30.0 | 3.24e-01 | 75.0% | 65.9% |
| 5009714 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 44.0 | 3.17e-01 | 100.0% | 83.5% |
| 4939656 | 2008.1.1.102 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 | 0.52 | 44.0 | 3.37e-01 | 98.1% | 77.6% |
| 5058451 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 41.0 | 2.87e-01 | 92.3% | 39.0% |
| 3365668 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 41.0 | 2.36e-01 | 96.2% | 8.3% |