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HQ633071.1__AGH31670.1__SWZG_00163__00157

Bact-Vir

HQ633071.1__AGH31670.1__SWZG_00163__00157

Identity

Accession:
HQ633071 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Llyrvirus› Synechococcus_phage_S-SKS1

TaxID: 754042

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 177-264
PDB
Domain cluster: rep: NC_020865.1__YP_007676328.1__CYZG_00006__00006__D1052-1126
D2 high residues 284-355
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 47.0 4.59e-01 76.4% 67.1%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 37.0 3.37e-01 72.2% 43.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.91e-01 72.2% 74.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.53 36.0 4.08e-01 72.2% 100.0%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.15e-01 100.0% 41.2%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.27e-01 77.8% 62.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.33e-01 76.4% 85.5%
3995160 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.56 37.0 4.20e-01 76.4% 98.0%
3251298 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 38.0 2.93e-01 83.3% 92.8%
3269758 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 38.0 3.69e-01 77.8% 73.8%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.51 37.0 3.68e-01 80.6% 73.3%
3919980 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 39.0 4.08e-01 95.8% 93.8%
D3 high residues 425-543
PDB
Domain cluster: rep: MN695335.1__QGT54872.1__b23_0258__00244__D907-1068
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 47.0 5.12e-01 98.3% 81.2%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.67 42.0 4.98e-01 97.5% 98.7%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.66 43.0 4.79e-01 98.3% 85.9%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 49.0 5.40e-01 100.0% 97.9%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.63 48.0 4.54e-01 100.0% 66.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 48.0 4.84e-01 87.4% 78.7%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 37.0 4.53e-01 82.4% 93.3%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 48.0 5.14e-01 98.3% 95.0%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 43.0 4.81e-01 98.3% 92.3%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 50.0 5.24e-01 99.2% 96.4%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 45.0 4.78e-01 98.3% 90.4%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 33.0 3.58e-01 100.0% 61.5%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 4.57e-01 99.2% 88.0%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.99e-01 98.3% 94.1%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 47.0 4.82e-01 99.2% 93.7%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 43.0 4.51e-01 89.9% 85.6%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 44.0 4.66e-01 100.0% 95.3%
1gqgC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 36.0 3.49e-01 100.0% 55.0%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 46.0 4.76e-01 99.2% 96.5%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 3.80e-01 100.0% 70.0%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 46.0 4.72e-01 100.0% 97.3%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 36.0 3.73e-01 97.5% 72.6%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 4.45e-01 95.0% 98.0%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.36e-01 100.0% 67.6%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 4.25e-01 84.9% 93.1%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 34.0 3.45e-01 99.2% 67.5%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 45.0 4.49e-01 98.3% 92.6%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 44.0 4.22e-01 100.0% 81.8%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 38.0 4.24e-01 79.8% 100.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 31.0 3.42e-01 100.0% 78.0%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.50 43.0 4.05e-01 98.3% 91.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602200 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 42.0 5.29e-01 96.6% 98.6%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 54.0 5.82e-01 100.0% 96.0%
3237442 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 53.0 5.72e-01 100.0% 96.0%
3710481 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 44.0 4.99e-01 98.3% 85.6%
3944005 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 48.0 4.71e-01 100.0% 65.4%
5010595 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 45.0 5.13e-01 99.2% 91.8%
2869319 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.67 44.0 4.72e-01 98.3% 79.6%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.66 52.0 5.44e-01 100.0% 93.3%
4214150 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 45.0 4.67e-01 89.9% 74.5%
4316037 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 46.0 4.78e-01 89.9% 77.3%
5041607 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 40.0 4.83e-01 98.3% 100.0%
3741028 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.64 49.0 5.21e-01 100.0% 93.3%
4944696 1.1.7.138 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.63 47.0 5.08e-01 98.3% 92.0%
5077063 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.63 40.0 4.72e-01 97.5% 100.0%
4971330 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.63 47.0 4.87e-01 98.3% 83.6%
3744112 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.63 51.0 5.26e-01 99.2% 92.7%
5001586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 43.0 4.80e-01 99.2% 94.4%
3714390 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.62 44.0 4.40e-01 98.3% 71.2%
4946101 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 5.03e-01 100.0% 94.3%
3688711 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 47.0 4.84e-01 99.2% 88.2%
3224730 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 5.18e-01 100.0% 96.4%
3277790 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 47.0 4.93e-01 100.0% 93.3%
5056769 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.59 40.0 4.53e-01 79.8% 92.1%
3224728 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.82e-01 100.0% 89.6%
3909822 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 5.17e-01 99.2% 99.1%
3742942 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 45.0 4.84e-01 99.2% 97.0%
2418866 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.58 49.0 5.09e-01 99.2% 96.5%
4127062 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.58 54.0 4.26e-01 100.0% 90.2%
4113879 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.58 53.0 4.02e-01 99.2% 75.9%
2883135 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.58 53.0 3.90e-01 100.0% 67.8%
4474384 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.58 53.0 4.26e-01 100.0% 92.0%
5005273 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 40.0 4.59e-01 82.4% 97.7%
4250275 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.57 52.0 4.15e-01 100.0% 88.5%
3535347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 5.11e-01 100.0% 99.1%
4012802 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 4.69e-01 99.2% 93.6%
5028147 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 48.0 4.89e-01 100.0% 93.9%
3171334 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.56 46.0 4.76e-01 98.3% 96.4%
4104079 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.56 50.0 4.94e-01 98.3% 92.8%
3932819 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 47.0 4.77e-01 100.0% 95.7%
3672526 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 47.0 4.66e-01 98.3% 87.2%
3834971 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.56 51.0 3.99e-01 100.0% 83.7%
4285152 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.55 51.0 4.12e-01 100.0% 93.2%
3688095 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 48.0 4.84e-01 97.5% 95.8%
3442209 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 46.0 4.68e-01 100.0% 93.9%
3783432 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.55 33.0 3.48e-01 100.0% 65.7%
4008248 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.55 48.0 4.75e-01 100.0% 89.2%
3598687 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 44.0 4.01e-01 86.6% 83.7%
3287089 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.54 49.0 4.71e-01 100.0% 95.6%
4011994 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 4.53e-01 99.2% 95.5%
3496352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.64e-01 98.3% 93.3%
3617125 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 45.0 4.10e-01 100.0% 67.3%
5040256 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.53 47.0 4.35e-01 100.0% 96.1%
4564926 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.53 48.0 4.61e-01 97.5% 100.0%
4032708 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 38.0 4.21e-01 93.3% 94.7%
4532022 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 46.0 4.33e-01 98.3% 78.6%
1949793 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.52 47.0 3.93e-01 100.0% 98.1%
3653815 11.1.5.63 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › COBRA 0.51 44.0 3.83e-01 95.0% 94.6%
3971176 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.51 42.0 3.72e-01 89.1% 87.4%
4132799 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 44.0 3.98e-01 94.1% 83.1%
5025184 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.44e-01 100.0% 99.1%
4528707 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 31.0 3.26e-01 100.0% 66.4%
D4 medium residues 2-75
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 50.0 4.99e-01 100.0% 82.1%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.87e-01 100.0% 72.0%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.62e-01 100.0% 74.7%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.58 45.0 4.04e-01 87.8% 79.1%
4n5uA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.32e-01 100.0% 65.7%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.58 49.0 3.91e-01 100.0% 77.2%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.20e-01 100.0% 68.4%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.43e-01 79.7% 74.6%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 44.0 3.46e-01 87.8% 78.3%
5gxdA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 36.0 3.10e-01 70.3% 53.4%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.77e-01 100.0% 84.9%
5t89X05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.10e-01 100.0% 83.6%
3fcsA03 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.54 45.0 3.82e-01 100.0% 75.5%
2w07B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.53 45.0 4.03e-01 100.0% 84.3%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 38.0 3.48e-01 81.1% 100.0%
2n0kA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.88e-01 89.2% 95.5%
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.51 35.0 3.59e-01 100.0% 75.3%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.26e-01 100.0% 83.3%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 42.0 3.31e-01 100.0% 90.8%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 40.0 3.86e-01 100.0% 76.4%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.84e-01 94.6% 91.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938899 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.62 53.0 4.53e-01 100.0% 79.2%
5030841 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.73e-01 100.0% 81.0%
4940929 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.01e-01 100.0% 56.4%
4970155 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.33e-01 100.0% 70.8%
3407001 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.57 49.0 4.34e-01 100.0% 78.3%
4010284 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.57 46.0 4.19e-01 100.0% 65.4%
4954828 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 37.0 4.11e-01 86.5% 100.0%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.14e-01 100.0% 75.3%
3293763 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.54 42.0 3.23e-01 87.8% 81.6%
3923782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 3.93e-01 94.6% 75.0%
4485740 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 38.0 3.45e-01 77.0% 98.2%
3025136 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 40.0 3.25e-01 82.4% 92.3%
4516444 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.53 40.0 3.47e-01 83.8% 91.2%
4933948 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 40.0 3.91e-01 86.5% 85.9%
3962454 218.2.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 0.52 38.0 3.21e-01 81.1% 80.0%
3475901 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 40.0 3.85e-01 89.2% 98.9%
2595209 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 33.0 3.60e-01 73.0% 86.2%
3899230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 38.0 3.52e-01 85.1% 85.0%
D5 medium residues 85-162
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wisA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.42e-01 79.5% 59.4%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.51 40.0 3.42e-01 100.0% 51.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620798 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.70e-01 100.0% 59.0%
3939482 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 37.0 3.15e-01 78.2% 43.4%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.51 43.0 3.53e-01 100.0% 65.2%
3995627 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.35e-01 78.2% 64.7%
D6 medium residues 356-424_544-588
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 36.0 4.70e-01 87.7% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 44.0 5.01e-01 87.7% 100.0%
3orqA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 36.0 4.59e-01 87.7% 100.0%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 4.47e-01 96.5% 76.9%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.45e-01 97.4% 74.6%
4nzdB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.74e-01 98.2% 89.9%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 49.0 5.01e-01 93.0% 99.1%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 48.0 4.86e-01 92.1% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 4.69e-01 93.0% 95.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 33.0 4.11e-01 91.2% 100.0%
4lk4A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 39.0 4.15e-01 73.7% 85.4%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 39.0 4.03e-01 73.7% 82.2%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.59e-01 93.9% 97.5%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.54 47.0 4.38e-01 95.6% 81.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 4.44e-01 94.7% 93.4%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 41.0 3.89e-01 94.7% 66.9%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 43.0 4.15e-01 93.0% 78.1%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 4.14e-01 98.2% 90.1%
7pzoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 37.0 3.98e-01 72.8% 87.5%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.14e-01 97.4% 81.8%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.97e-01 91.2% 97.4%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.31e-01 96.5% 94.3%
4mjjA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 39.0 3.92e-01 96.5% 78.4%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 4.39e-01 94.7% 96.4%
4h40A01 2.60.40.3730 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.51 43.0 3.85e-01 90.4% 99.4%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 4.40e-01 93.0% 99.1%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.51 38.0 3.24e-01 95.6% 45.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4429352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 50.0 5.56e-01 97.4% 95.6%
3893654 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.64 50.0 5.07e-01 93.9% 82.6%
4029335 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.62 38.0 4.48e-01 92.1% 92.0%
4977991 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 4.82e-01 89.5% 90.0%
3313542 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 50.0 5.22e-01 96.5% 100.0%
4939996 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.59 48.0 4.99e-01 94.7% 94.3%
5024522 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 52.0 4.62e-01 96.5% 70.3%
1481034 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 4.61e-01 96.5% 82.9%
3973696 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.86e-01 94.7% 84.8%
4460819 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 46.0 4.84e-01 97.4% 95.0%
3987460 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.58 50.0 5.15e-01 93.9% 99.1%
4003995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 43.0 3.95e-01 97.4% 60.0%
3311693 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 5.00e-01 91.2% 99.0%
5069243 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 4.49e-01 96.5% 90.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 35.0 4.17e-01 93.0% 94.6%
3185864 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 4.55e-01 94.7% 99.3%
3938229 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.56e-01 98.2% 87.3%
3887804 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 40.0 4.04e-01 97.4% 77.4%
3273490 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.53 46.0 4.60e-01 95.6% 99.2%
3881290 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 43.0 4.05e-01 97.4% 72.4%
4683474 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.52 29.0 3.28e-01 88.6% 73.8%
3551222 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.98e-01 99.1% 78.3%
3469974 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 41.0 4.04e-01 94.7% 80.8%
3610889 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 43.0 4.00e-01 94.7% 100.0%
3275976 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.50 42.0 4.05e-01 93.9% 80.8%