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HQ633071.1__AGH31692.1__SWZG_00186__00179

Bact-Vir

HQ633071.1__AGH31692.1__SWZG_00186__00179

Identity

Accession:
HQ633071 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Llyrvirus› Synechococcus_phage_S-SKS1

TaxID: 754042

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.82 61.0 6.11e-01 100.0% 80.4%
1oheA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.73 61.0 4.34e-01 100.0% 39.6%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.73 61.0 4.21e-01 100.0% 28.4%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 60.0 4.31e-01 100.0% 32.9%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.72 61.0 4.59e-01 100.0% 42.0%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 52.0 5.18e-01 93.5% 82.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.70e-01 100.0% 100.0%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 51.0 5.15e-01 100.0% 88.6%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 54.0 4.79e-01 100.0% 84.9%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 53.0 4.56e-01 100.0% 83.5%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 49.0 4.30e-01 95.7% 70.3%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 2.94e-01 100.0% 18.2%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 46.0 4.23e-01 95.7% 75.0%
1vbgA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.59 49.0 4.47e-01 95.7% 95.2%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.08e-01 100.0% 20.9%
2x0sA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.57 47.0 4.27e-01 95.7% 95.4%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 46.0 3.71e-01 97.8% 59.4%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 2.97e-01 100.0% 20.2%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.56 45.0 3.46e-01 97.8% 84.3%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.55 39.0 3.70e-01 80.4% 61.7%
3r0vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 2.87e-01 100.0% 67.3%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.52 41.0 3.42e-01 97.8% 94.9%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 2.91e-01 100.0% 24.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2081403 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.79 66.0 6.24e-01 97.8% 77.2%
4936137 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.77 67.0 6.01e-01 100.0% 72.3%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.76 65.0 5.39e-01 100.0% 60.0%
3941666 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.75 62.0 5.41e-01 100.0% 59.5%
3946360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.58e-01 100.0% 67.7%
4928271 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 6.08e-01 91.3% 100.0%
4025999 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.74 64.0 5.37e-01 100.0% 60.0%
5029219 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.61e-01 100.0% 78.2%
4167193 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.73 59.0 5.94e-01 95.7% 95.6%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.61e-01 100.0% 78.2%
4028663 545.1.2.0 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.73 62.0 4.74e-01 100.0% 55.7%
3746419 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.72 60.0 3.60e-01 97.8% 27.9%
4025194 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.65e-01 97.8% 85.5%
3506989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 5.92e-01 100.0% 94.0%
3693971 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.71 59.0 5.63e-01 97.8% 92.7%
5024512 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.67e-01 97.8% 92.0%
3174238 101.1.1.247 ↗ alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.70 60.0 5.32e-01 100.0% 68.6%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.41e-01 97.8% 81.7%
3687846 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.70 59.0 5.49e-01 100.0% 85.0%
4944585 101.1.2.872 ↗ alpha arrays › HTH › HTH › winged helix domain › rve 0.70 57.0 5.35e-01 97.8% 83.3%
4946654 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.41e-01 100.0% 83.3%
3515964 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.69 60.0 4.74e-01 100.0% 90.7%
4558866 101.1.1.465 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF5338 0.69 56.0 5.57e-01 97.8% 96.0%
4016548 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.69 56.0 5.38e-01 97.8% 80.0%
3881313 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.11e-01 97.8% 75.4%
3713972 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.32e-01 97.8% 56.5%
3890613 101.1.2.698 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27079 0.67 56.0 5.06e-01 97.8% 81.5%
3661911 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.66 51.0 4.94e-01 97.8% 77.4%
5058376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.36e-01 100.0% 57.9%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 4.95e-01 97.8% 76.7%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.53e-01 95.7% 57.5%
4001430 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 50.0 4.52e-01 89.1% 73.8%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.63 52.0 5.17e-01 97.8% 94.0%
5068885 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.62 47.0 4.09e-01 97.8% 48.9%
3575777 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.62 49.0 4.89e-01 97.8% 92.0%
3930425 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 3.76e-01 97.8% 49.6%
3457901 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 49.0 3.49e-01 95.7% 91.2%
3750961 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.61 50.0 4.29e-01 93.5% 61.3%
5028556 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.58 49.0 3.17e-01 100.0% 75.3%
3777469 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.58 47.0 2.79e-01 100.0% 10.9%
3883209 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.53 43.0 2.84e-01 100.0% 18.8%