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HQ633071.1__AGH31699.1__SWZG_00193__00186
Bact-VirHQ633071.1__AGH31699.1__SWZG_00193__00186
Identity
- Accession:
- HQ633071 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Taxonomy
TaxID: 754042
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 191-237
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzbA02 | 1.20.5.3070 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.92 | 57.0 | 6.15e-01 | 72.3% | 75.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.80 | 53.0 | 3.33e-01 | 70.2% | 14.2% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 56.0 | 4.59e-01 | 76.6% | 79.8% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.77 | 65.0 | 4.69e-01 | 100.0% | 35.5% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.74 | 63.0 | 3.63e-01 | 100.0% | 12.4% |
| 3w2zA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.74 | 61.0 | 4.18e-01 | 97.9% | 91.0% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 57.0 | 5.41e-01 | 87.2% | 75.0% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 61.0 | 5.17e-01 | 97.9% | 57.7% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 58.0 | 5.49e-01 | 100.0% | 74.5% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.71 | 62.0 | 4.40e-01 | 95.7% | 41.4% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 58.0 | 4.35e-01 | 100.0% | 37.7% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 56.0 | 4.36e-01 | 100.0% | 39.8% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 47.0 | 4.28e-01 | 76.6% | 67.6% |
| 1vbgA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.67 | 54.0 | 5.01e-01 | 93.6% | 92.1% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 5.17e-01 | 97.9% | 72.7% |
| 1bhpA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.66 | 50.0 | 5.11e-01 | 80.9% | 91.1% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 5.23e-01 | 97.9% | 85.2% |
| 3ecqA07 | 6.10.140.660 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 42.0 | 4.27e-01 | 72.3% | 71.1% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.62 | 46.0 | 3.23e-01 | 100.0% | 23.9% |
| 2hqtK00 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 53.0 | 4.01e-01 | 100.0% | 41.9% |
| 2r7cA02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.61 | 48.0 | 3.38e-01 | 100.0% | 26.1% |
| 2xbkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 48.0 | 2.91e-01 | 100.0% | 35.0% |
| 2dsrG00 | 4.10.800.10 | Few Secondary Structures › Irregular › Invariant Chain; Chain I › Thyroglobulin type-1 | 0.60 | 42.0 | 3.63e-01 | 80.9% | 45.6% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.59 | 48.0 | 4.28e-01 | 97.9% | 63.2% |
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.58 | 49.0 | 4.72e-01 | 100.0% | 98.2% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.57 | 45.0 | 3.08e-01 | 89.4% | 74.0% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 43.0 | 3.85e-01 | 100.0% | 62.2% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 43.0 | 4.21e-01 | 91.5% | 92.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948356 | 101.1.1.243 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Rpn_C | 0.81 | 54.0 | 6.12e-01 | 91.5% | 94.3% |
| 3945906 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.81 | 57.0 | 6.19e-01 | 93.6% | 87.5% |
| 3981541 | 101.1.1.243 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Rpn_C | 0.79 | 61.0 | 5.77e-01 | 97.9% | 70.9% |
| 5053505 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.78 | 58.0 | 5.76e-01 | 100.0% | 76.0% |
| 62158 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.77 | 66.0 | 4.76e-01 | 100.0% | 35.0% |
| 3920862 | 101.1.1.221 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 | 0.76 | 60.0 | 5.89e-01 | 89.4% | 80.0% |
| 4933758 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 62.0 | 6.34e-01 | 100.0% | 97.8% |
| 3608380 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.75 | 52.0 | 3.01e-01 | 74.5% | 8.3% |
| 4995679 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.74 | 65.0 | 6.43e-01 | 100.0% | 94.0% |
| 4946087 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.74 | 65.0 | 4.71e-01 | 97.9% | 59.2% |
| 5030502 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 59.0 | 5.99e-01 | 95.7% | 93.3% |
| 142326 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.71 | 47.0 | 3.02e-01 | 76.6% | 14.5% |
| 1068633 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.70 | 56.0 | 5.64e-01 | 93.6% | 95.7% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.69 | 59.0 | 5.62e-01 | 95.7% | 92.7% |
| 4392311 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.69 | 54.0 | 5.47e-01 | 93.6% | 93.3% |
| 4112388 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.68 | 56.0 | 4.51e-01 | 97.9% | 50.0% |
| 4189213 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.66 | 46.0 | 4.04e-01 | 74.5% | 89.3% |
| 3509826 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 55.0 | 4.13e-01 | 100.0% | 78.5% |
| 3943189 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.66 | 58.0 | 5.55e-01 | 100.0% | 90.9% |
| 4092791 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.66 | 52.0 | 5.26e-01 | 93.6% | 97.8% |
| 5028769 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.65 | 50.0 | 4.67e-01 | 97.9% | 66.2% |
| 3212897 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.65 | 52.0 | 4.66e-01 | 100.0% | 69.3% |
| 2998473 | 3546.1.1.0 ↗ | alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain | 0.64 | 52.0 | 4.90e-01 | 100.0% | 82.0% |
| 3449917 | 3546.1.1.1 ↗ | alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N | 0.64 | 52.0 | 4.93e-01 | 97.9% | 78.3% |
| 1720496 | 3546.1.1.1 ↗ | alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N | 0.64 | 51.0 | 5.15e-01 | 97.9% | 97.9% |
| 3625551 | 3546.1.1.1 ↗ | alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N | 0.64 | 52.0 | 4.89e-01 | 97.9% | 76.7% |
| 4495785 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.62 | 51.0 | 4.96e-01 | 100.0% | 90.9% |
| 4034594 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 51.0 | 4.89e-01 | 97.9% | 94.5% |
| 4021036 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.61 | 43.0 | 3.53e-01 | 78.7% | 37.0% |
| 4955412 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.60 | 46.0 | 3.31e-01 | 95.7% | 36.3% |
| 3629127 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.59 | 51.0 | 3.58e-01 | 100.0% | 33.5% |
| 3793643 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 41.0 | 2.43e-01 | 85.1% | 43.6% |
| 4553607 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.53 | 39.0 | 3.02e-01 | 97.9% | 31.4% |
D2
medium
residues 35-173
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6igxD01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 47.0 | 3.83e-01 | 99.3% | 40.8% |
| 1qsaA01 | 1.25.20.10 | Mainly Alpha › Alpha Horseshoe › 70-kda Soluble Lytic Transglycosylase; domain 1 › Bacterial muramidases | 0.60 | 44.0 | 3.26e-01 | 76.3% | 40.5% |
| 3vldA02 | 1.25.40.580 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 45.0 | 4.41e-01 | 100.0% | 75.8% |
| 5bz1A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 51.0 | 3.76e-01 | 100.0% | 45.8% |
| 1wjtA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 34.0 | 3.90e-01 | 100.0% | 82.5% |
| 3ha4B00 | 1.20.58.690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 41.0 | 4.43e-01 | 78.4% | 95.0% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 35.0 | 3.93e-01 | 85.6% | 84.9% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 34.0 | 3.64e-01 | 95.0% | 71.5% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 46.0 | 4.71e-01 | 99.3% | 96.3% |
| 4i2zA02 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 47.0 | 3.50e-01 | 100.0% | 52.4% |
| 8amzP01 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 45.0 | 3.34e-01 | 100.0% | 35.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940672 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.71 | 52.0 | 5.87e-01 | 100.0% | 100.0% |
| 4945501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 4.17e-01 | 94.2% | 51.8% |
| 3751874 | 109.4.1.177 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 | 0.58 | 52.0 | 3.23e-01 | 100.0% | 20.7% |
| 3721690 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 47.0 | 4.90e-01 | 92.1% | 93.1% |
| 3639438 | 109.4.1.1932 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1, PF26140 | 0.57 | 52.0 | 3.60e-01 | 100.0% | 29.9% |
| 3763555 | 109.4.1.1505 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 | 0.57 | 50.0 | 4.41e-01 | 97.8% | 98.6% |
| 3963715 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 38.0 | 4.43e-01 | 94.2% | 100.0% |
| 3863073 | 109.4.1.357 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd | 0.56 | 50.0 | 3.70e-01 | 100.0% | 60.8% |
| 3373701 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.56 | 47.0 | 3.34e-01 | 93.5% | 65.2% |
| 3708647 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.55 | 44.0 | 3.88e-01 | 87.1% | 80.5% |
| 1877245 | 109.54.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp13 | 0.54 | 41.0 | 4.22e-01 | 100.0% | 84.1% |
| 1814352 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.54 | 35.0 | 3.93e-01 | 85.6% | 84.9% |
| 4433661 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.54 | 35.0 | 3.71e-01 | 93.5% | 72.8% |
| 3891469 | 109.4.1.926 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FH3_FHOD1-3 | 0.52 | 39.0 | 4.20e-01 | 78.4% | 99.1% |
| 3729571 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 3.87e-01 | 80.6% | 97.2% |