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HQ634153.1__AGH31819.1__SLPG_00025__00025
Bact-VirHQ634153.1__AGH31819.1__SLPG_00025__00025
Identity
- Accession:
- HQ634153 ↗
- Kingdom:
- phage
Quality
74.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-74
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r1fA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.73 | 52.0 | 5.69e-01 | 90.4% | 100.0% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 45.0 | 3.29e-01 | 80.8% | 26.3% |
| 1qi9A00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.67 | 56.0 | 3.19e-01 | 92.3% | 65.2% |
| 2ww5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 45.0 | 3.02e-01 | 73.1% | 35.1% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 3.57e-01 | 100.0% | 33.1% |
| 3fljA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 44.0 | 3.22e-01 | 73.1% | 68.8% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.61 | 44.0 | 2.66e-01 | 76.9% | 41.9% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 39.0 | 3.51e-01 | 75.0% | 44.2% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.42e-01 | 100.0% | 34.1% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 3.66e-01 | 82.7% | 67.3% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.58 | 42.0 | 3.48e-01 | 78.8% | 87.1% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.58 | 45.0 | 3.44e-01 | 94.2% | 37.0% |
| 3wisA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.58 | 44.0 | 3.08e-01 | 84.6% | 93.9% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.57 | 41.0 | 2.98e-01 | 80.8% | 49.1% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.56 | 40.0 | 2.88e-01 | 98.1% | 26.5% |
| 1b25A03 | 1.10.599.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 | 0.56 | 45.0 | 3.01e-01 | 90.4% | 29.6% |
| 1i6aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 46.0 | 3.76e-01 | 100.0% | 92.6% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 47.0 | 3.38e-01 | 100.0% | 91.0% |
| 5kd5A01 | 1.10.390.30 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 | 0.54 | 39.0 | 2.77e-01 | 78.8% | 90.5% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 38.0 | 3.19e-01 | 73.1% | 82.6% |
| 6ks6Z02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.54 | 47.0 | 3.75e-01 | 100.0% | 80.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 45.0 | 3.90e-01 | 100.0% | 60.9% |
| 1upqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.40e-01 | 90.4% | 89.7% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 43.0 | 3.55e-01 | 90.4% | 76.1% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 3.21e-01 | 86.5% | 86.6% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.50 | 45.0 | 2.78e-01 | 98.1% | 24.6% |
| 4zyaB00 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.50 | 40.0 | 3.53e-01 | 86.5% | 89.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816396 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.74 | 53.0 | 3.44e-01 | 76.9% | 45.1% |
| 3640935 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.74 | 54.0 | 3.44e-01 | 76.9% | 44.3% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 53.0 | 3.55e-01 | 78.8% | 49.2% |
| 3993195 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.70 | 53.0 | 3.97e-01 | 82.7% | 97.7% |
| 4119221 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.69 | 49.0 | 4.51e-01 | 75.0% | 98.5% |
| 3545313 | 150.1.1.79 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_TM1-24 | 0.67 | 49.0 | 3.57e-01 | 76.9% | 45.9% |
| 3737218 | 859.1.1.3 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 | 0.65 | 49.0 | 3.43e-01 | 82.7% | 73.1% |
| 4943269 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.63 | 47.0 | 3.07e-01 | 80.8% | 36.3% |
| 5038181 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.61 | 44.0 | 2.66e-01 | 76.9% | 15.2% |
| 3652639 | 109.4.1.1384 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_long | 0.60 | 49.0 | 3.04e-01 | 88.5% | 34.8% |
| 4495050 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.58 | 49.0 | 3.91e-01 | 96.2% | 90.0% |
| 4107364 | 4002.1.1.4 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C | 0.58 | 41.0 | 2.86e-01 | 75.0% | 29.4% |
| 4538262 | 5051.1.1.3 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF | 0.58 | 48.0 | 2.77e-01 | 100.0% | 27.3% |
| 3929673 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.57 | 49.0 | 3.46e-01 | 100.0% | 32.0% |
| 3617695 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 50.0 | 3.02e-01 | 100.0% | 22.6% |
| 5060078 | 2484.1.1.291 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_V | 0.56 | 47.0 | 2.64e-01 | 94.2% | 39.4% |
| 3775055 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.55 | 46.0 | 2.61e-01 | 92.3% | 8.0% |
| 2502892 | 7066.1.1.0 ↗ | 0.55 | 35.0 | 3.03e-01 | 92.3% | 42.0% | |
| 4982318 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.55 | 46.0 | 4.37e-01 | 96.2% | 78.3% |
| 3973666 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.54 | 45.0 | 3.55e-01 | 94.2% | 85.2% |
| 3244833 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.54 | 44.0 | 2.49e-01 | 92.3% | 11.0% |
| 4991587 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.54 | 38.0 | 2.93e-01 | 75.0% | 67.7% |
| 4131084 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.53 | 45.0 | 2.87e-01 | 100.0% | 19.3% |
| 3808795 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.53 | 42.0 | 3.19e-01 | 98.1% | 85.3% |
| 3751034 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.52 | 47.0 | 2.98e-01 | 100.0% | 36.6% |
| 3230011 | 6106.1.1.0 ↗ | extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY | 0.51 | 38.0 | 3.28e-01 | 100.0% | 49.4% |
| 3783637 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 41.0 | 3.23e-01 | 90.4% | 88.7% |
| 3287018 | 2007.13.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.51 | 43.0 | 2.97e-01 | 96.2% | 89.5% |
| 3395750 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.13e-01 | 100.0% | 85.7% |