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HQ634153.1__AGH31858.1__SLPG_00064__00064

Bact-Vir

HQ634153.1__AGH31858.1__SLPG_00064__00064

Identity

Accession:
HQ634153 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_CGphi29

TaxID: 754067

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-198
PDB
Domain cluster: rep: IMGVR_UViG_3300026211_000011-3300026211-Ga0208132_10019531__D46-252
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00271.38 best Helicase_C 64.0 2.00e-17 63.1% 96.4%
D2 high residues 267-371
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 31.0 4.01e-01 98.1% 86.2%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.61 43.0 4.01e-01 100.0% 57.1%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.39e-01 100.0% 73.8%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 4.37e-01 100.0% 80.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 50.0 4.77e-01 95.2% 95.2%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 39.0 4.33e-01 94.3% 87.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 48.0 4.69e-01 92.4% 98.3%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 3.77e-01 100.0% 45.4%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.56 33.0 3.22e-01 81.0% 49.6%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.47e-01 100.0% 95.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 28.0 3.35e-01 100.0% 72.5%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 4.39e-01 100.0% 86.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 37.0 3.56e-01 99.0% 58.9%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 29.0 3.54e-01 89.5% 81.2%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 32.0 3.79e-01 96.2% 87.3%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 29.0 3.67e-01 88.6% 91.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 29.0 3.55e-01 89.5% 81.5%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 26.0 3.17e-01 90.5% 73.3%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 41.0 2.94e-01 84.8% 86.0%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 44.0 4.15e-01 98.1% 75.4%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.91e-01 96.2% 34.2%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 4.21e-01 95.2% 92.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 30.0 3.49e-01 86.7% 85.9%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 31.0 3.10e-01 94.3% 59.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.50 35.0 3.12e-01 70.5% 72.7%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.50 33.0 3.03e-01 90.5% 51.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 45.0 5.19e-01 100.0% 91.9%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 37.0 4.45e-01 94.3% 77.1%
3941741 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 4.52e-01 100.0% 59.3%
5059673 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.59e-01 100.0% 77.0%
4562544 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 48.0 4.70e-01 100.0% 73.9%
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 37.0 4.24e-01 83.8% 81.3%
4945682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 4.63e-01 100.0% 70.4%
169967 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.61 43.0 4.00e-01 100.0% 56.7%
3350473 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 28.0 3.44e-01 88.6% 65.7%
4063575 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 40.0 3.86e-01 74.3% 60.9%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 51.0 4.85e-01 94.3% 97.6%
3924626 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.59 35.0 3.87e-01 80.0% 71.8%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 32.0 4.14e-01 80.0% 100.0%
5059130 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 4.52e-01 100.0% 80.0%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 42.0 3.95e-01 100.0% 63.1%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.56 29.0 3.21e-01 100.0% 61.3%
3456692 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 30.0 3.83e-01 95.2% 93.2%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 37.0 2.98e-01 79.0% 35.1%
4978172 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.55 40.0 4.17e-01 98.1% 84.2%
4770305 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.55 30.0 3.61e-01 89.5% 82.8%
3705431 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 48.0 4.75e-01 100.0% 93.9%
4771028 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.54 29.0 3.56e-01 89.5% 82.5%
3289254 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.54 36.0 3.72e-01 79.0% 73.7%
4797813 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.54 29.0 3.67e-01 88.6% 91.2%
4137022 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 47.0 4.28e-01 100.0% 77.2%
3178803 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.53 36.0 3.91e-01 83.8% 85.9%
4090939 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 31.0 3.51e-01 96.2% 76.2%
4014670 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.52 40.0 3.59e-01 97.1% 57.3%
3519032 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 32.0 3.35e-01 97.1% 65.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.52 28.0 3.30e-01 82.9% 77.1%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 30.0 3.22e-01 97.1% 65.3%
3821398 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 37.0 2.76e-01 77.1% 55.7%
3685150 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 41.0 3.58e-01 88.6% 97.0%
3499841 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 33.0 3.51e-01 98.1% 75.6%
4433009 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.50 34.0 2.66e-01 94.3% 30.4%
3864513 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 34.0 3.27e-01 84.8% 57.6%
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.50 30.0 3.44e-01 72.4% 82.7%
3630103 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 3.28e-01 99.0% 58.5%