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HQ634156.1__AGH31859.1__VPIG_00001__00001

Bact-Vir

HQ634156.1__AGH31859.1__VPIG_00001__00001

Identity

Accession:
HQ634156 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PWH3a-P1

TaxID: 754058

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-79
PDB
Domain cluster: rep: MW824372.1__QZI87006.1__MYOV056v2_p0233__00232__D222-279
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21817.4 best CapR 37.0 4.30e-09 81.0% 91.0%
D2 high residues 111-194
PDB
D3 high residues 202-297
PDB
Domain cluster: rep: ON286972.1__USL83473.1__A4_397__00152__D20-123
D4 high residues 303-393
PDB
Domain cluster: rep: LC739535.1__BDU12757.1__X__00172__D111-202
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.83 54.0 6.53e-01 85.7% 96.8%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.80 50.0 6.27e-01 76.9% 100.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 40.0 3.86e-01 95.6% 53.5%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 37.0 4.05e-01 70.3% 68.5%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 37.0 4.18e-01 70.3% 74.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 38.0 3.67e-01 71.4% 53.9%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.62 43.0 4.27e-01 71.4% 92.7%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 36.0 3.83e-01 73.6% 64.6%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.60 41.0 3.59e-01 70.3% 61.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.58 33.0 3.66e-01 90.1% 68.9%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 50.0 4.24e-01 95.6% 87.2%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 49.0 4.10e-01 94.5% 83.0%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.94e-01 75.8% 86.2%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 43.0 3.83e-01 86.8% 83.3%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.53 42.0 4.46e-01 91.2% 97.5%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 47.0 2.77e-01 100.0% 62.7%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.52 38.0 3.51e-01 79.1% 80.8%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.16e-01 95.6% 91.8%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 30.0 2.90e-01 91.2% 49.1%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 30.0 3.44e-01 93.4% 86.4%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.50 41.0 3.40e-01 87.9% 90.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.60e-01 84.6% 68.9%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 37.0 2.67e-01 81.3% 88.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3293480 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.84 50.0 5.94e-01 81.3% 84.6%
3831192 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.84 55.0 5.73e-01 86.8% 71.8%
3661849 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.84 53.0 6.37e-01 86.8% 93.7%
3467141 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 55.0 5.11e-01 83.5% 56.4%
3440839 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 51.0 4.93e-01 83.5% 57.0%
3380188 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.81 48.0 6.17e-01 80.2% 98.2%
3664743 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.76 54.0 5.38e-01 84.6% 70.5%
3468885 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.74 59.0 6.27e-01 92.3% 93.8%
5029880 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 40.0 4.00e-01 72.5% 52.6%
3370971 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 52.0 5.24e-01 80.2% 75.6%
4963078 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.66 43.0 4.29e-01 81.3% 63.2%
3883661 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 42.0 4.02e-01 95.6% 55.5%
4999330 604.12.1.135 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.63 35.0 3.43e-01 84.6% 48.0%
4225063 3840.1.1.2 ↗ a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.60 42.0 3.97e-01 72.5% 72.7%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.60 47.0 4.96e-01 97.8% 95.0%
4015907 601.33.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.59 42.0 4.41e-01 95.6% 81.0%
3852486 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.59 43.0 3.59e-01 75.8% 85.3%
3643672 109.4.1.891 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_HEATR1 0.58 49.0 3.19e-01 95.6% 32.7%
4100834 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.58 40.0 2.81e-01 71.4% 31.1%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 37.0 3.44e-01 70.3% 51.7%
4946656 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 38.0 3.43e-01 71.4% 52.5%
3424914 109.4.1.583 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.56 47.0 3.25e-01 93.4% 42.7%
3375753 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.56 50.0 3.96e-01 100.0% 84.0%
5026366 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.55 49.0 3.96e-01 100.0% 86.7%
3602632 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.55 48.0 3.87e-01 100.0% 84.3%
5054487 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.55 48.0 4.15e-01 100.0% 88.0%
4973788 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.54 49.0 4.20e-01 100.0% 87.6%
3956181 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 43.0 3.84e-01 87.9% 90.4%
4975569 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.44e-01 73.6% 76.0%
3513623 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 44.0 3.69e-01 100.0% 50.9%
4947665 223.2.1.58 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Arf 0.53 37.0 3.43e-01 73.6% 77.5%
3905051 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.53 44.0 3.19e-01 91.2% 71.2%
3274209 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.52 46.0 3.84e-01 100.0% 82.4%
4466104 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.52 42.0 3.72e-01 90.1% 92.1%
3887418 633.21.1.46 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › TMEM125 0.52 44.0 3.75e-01 93.4% 76.0%
4182591 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.52 44.0 3.84e-01 93.4% 65.7%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 40.0 3.37e-01 83.5% 53.5%
3170204 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.51 44.0 3.87e-01 94.5% 68.9%
5067889 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 44.0 4.21e-01 95.6% 86.7%
5063996 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 43.0 3.25e-01 94.5% 46.2%
3394529 603.1.1.101 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 0.50 42.0 2.87e-01 93.4% 71.4%
4939754 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.50 44.0 3.55e-01 100.0% 67.7%