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HQ634156.1__AGH32055.1__VPIG_00199__00197

Bact-Vir

HQ634156.1__AGH32055.1__VPIG_00199__00197

Identity

Accession:
HQ634156 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PWH3a-P1

TaxID: 754058

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21817.4 best CapR 32.8 8.80e-08 78.7% 52.2%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.71 43.0 4.10e-01 74.5% 50.0%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.70 50.0 4.29e-01 87.2% 46.3%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 51.0 3.39e-01 87.2% 43.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 48.0 3.72e-01 80.9% 32.7%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.33e-01 74.5% 34.3%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 48.0 2.85e-01 93.6% 10.7%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 43.0 3.83e-01 78.7% 50.7%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 45.0 3.33e-01 83.0% 48.5%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 3.36e-01 74.5% 46.5%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.60 44.0 3.06e-01 87.2% 47.3%
4krgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 46.0 2.92e-01 85.1% 20.9%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 39.0 3.00e-01 80.9% 26.4%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.59 44.0 4.08e-01 83.0% 72.6%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 43.0 3.06e-01 83.0% 23.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 43.0 3.91e-01 83.0% 57.1%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 44.0 3.56e-01 83.0% 83.3%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.58 42.0 3.13e-01 85.1% 29.8%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.57 40.0 3.16e-01 76.6% 34.0%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 34.0 3.33e-01 70.2% 46.4%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 41.0 3.62e-01 80.9% 50.0%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 44.0 3.25e-01 91.5% 44.1%
2fvgA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 37.0 2.43e-01 70.2% 31.5%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 40.0 3.43e-01 83.0% 47.3%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.38e-01 85.1% 41.2%
2m05A00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.55 41.0 3.83e-01 87.2% 75.4%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 41.0 3.37e-01 89.4% 45.1%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 37.0 3.07e-01 74.5% 46.0%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 42.0 3.48e-01 100.0% 63.1%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 37.0 2.76e-01 97.9% 25.3%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.52 38.0 3.23e-01 85.1% 94.7%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.52 42.0 3.55e-01 100.0% 51.2%
4jivD00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 37.0 3.17e-01 83.0% 83.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.36e-01 76.6% 55.4%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 40.0 3.54e-01 89.4% 88.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.52 38.0 3.42e-01 87.2% 57.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.40e-01 78.7% 60.3%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.21e-01 100.0% 40.4%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.13e-01 85.1% 50.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947785 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.74 49.0 4.37e-01 74.5% 47.8%
3405763 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.72 51.0 2.94e-01 80.9% 7.6%
3585214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 3.65e-01 70.2% 32.0%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.70 51.0 4.80e-01 80.9% 63.8%
3234110 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.70 47.0 3.10e-01 72.3% 16.9%
3957249 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 4.88e-01 83.0% 69.1%
4003553 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.68 48.0 2.78e-01 80.9% 8.0%
3198325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 47.0 2.86e-01 74.5% 11.7%
3895174 206.1.1.76 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.67 48.0 2.92e-01 80.9% 10.7%
3480049 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 48.0 2.89e-01 80.9% 10.3%
3917309 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.67 48.0 2.94e-01 80.9% 11.2%
3198697 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 49.0 2.99e-01 80.9% 12.1%
3183652 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.66 45.0 3.45e-01 72.3% 31.8%
3841401 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 44.0 2.97e-01 87.2% 18.4%
4491981 3114.1.1.1 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.63 47.0 4.04e-01 83.0% 58.7%
4654417 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.63 41.0 3.30e-01 74.5% 32.0%
4013406 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 3.69e-01 72.3% 45.3%
3356712 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.67e-01 80.9% 91.1%
3459335 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.62 47.0 3.77e-01 85.1% 77.6%
4298531 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.61 42.0 3.25e-01 72.3% 36.5%
4061290 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.61 41.0 3.67e-01 72.3% 46.6%
3169636 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 46.0 3.88e-01 85.1% 47.1%
3181439 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.50e-01 83.0% 56.5%
3624143 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.60 43.0 4.21e-01 80.9% 67.3%
3839369 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 40.0 3.44e-01 100.0% 40.0%
3476540 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.60 46.0 3.44e-01 80.9% 32.5%
3706839 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.59 40.0 3.28e-01 74.5% 36.0%
3237027 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 42.0 3.43e-01 80.9% 38.9%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 38.0 3.35e-01 100.0% 40.0%
1557343 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 43.0 3.91e-01 83.0% 57.1%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 42.0 3.28e-01 83.0% 34.2%
3598222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.79e-01 80.9% 61.4%
3631472 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.58 41.0 2.76e-01 80.9% 18.0%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 43.0 3.88e-01 80.9% 61.5%
3848539 58.1.1.1 ↗ beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.58 45.0 3.43e-01 85.1% 94.8%
3648541 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 41.0 2.80e-01 93.6% 19.0%
None — 0.57 42.0 2.34e-01 95.7% 5.3%
3585671 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 42.0 4.16e-01 85.1% 80.0%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.56 41.0 3.54e-01 80.9% 48.8%
2512922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.99e-01 93.6% 78.6%
2674741 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.55 40.0 3.87e-01 80.9% 72.7%
3586385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.81e-01 78.7% 89.1%
3382561 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.55 38.0 2.61e-01 80.9% 17.1%
4977206 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.74e-01 80.9% 65.0%
3652079 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 42.0 3.33e-01 100.0% 38.3%
5006931 1.1.7.139 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HcyBio 0.54 46.0 3.02e-01 95.7% 28.8%
3893440 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 39.0 4.04e-01 100.0% 88.4%
3948150 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.53 38.0 3.19e-01 80.9% 45.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.40e-01 80.9% 52.9%
3999926 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.82e-01 85.1% 72.7%
3635565 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.53 43.0 3.77e-01 100.0% 58.7%
3496292 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 41.0 3.93e-01 100.0% 74.5%
3937060 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.52 41.0 3.46e-01 100.0% 54.7%
4014809 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 36.0 3.35e-01 100.0% 56.9%
4129680 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.50 43.0 3.36e-01 100.0% 53.6%