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HQ634157.1__AGH32079.1__VPHG_00012__00012

Bact-Vir

HQ634157.1__AGH32079.1__VPHG_00012__00012

Identity

Accession:
HQ634157 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_11895-B1

TaxID: 754075

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-118
PDB
Domain cluster: rep: MN732867.1__QGZ16228.1__Hena1_00520__00051__D16-162
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.55 44.0 4.39e-01 88.2% 86.1%
7oocE01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.53 37.0 4.11e-01 90.0% 95.3%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 38.0 3.89e-01 90.9% 78.5%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 38.0 4.08e-01 90.0% 90.4%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 4.09e-01 86.4% 91.0%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 33.0 3.49e-01 86.4% 74.5%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.50 29.0 3.49e-01 75.5% 91.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4809499 304.109.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.54 33.0 3.70e-01 81.8% 80.0%
4372705 101.1.9.2 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.51 34.0 3.71e-01 79.1% 83.3%
3994102 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.51 27.0 3.36e-01 73.6% 81.4%
4151399 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.51 32.0 3.58e-01 88.2% 85.0%
3990850 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.51 27.0 3.40e-01 72.7% 87.7%
4003892 389.2.1.0 ↗ few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.50 26.0 3.40e-01 72.7% 91.7%