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HQ634157.1AGH32122.1VPHG_00055__00055

Bact-Vir

HQ634157.1__AGH32122.1__VPHG_00055__00055

Identity

Accession:: HQ634157 ↗
Kingdom:: phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_11895-B1

TaxID: 754075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-86

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.71	53.0	4.42e-01	79.2%	88.0%
6h9xA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.71	48.0	4.35e-01	70.1%	57.8%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.70	52.0	4.75e-01	79.2%	88.3%
2l3lA01	1.20.58.1250	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain	0.69	51.0	4.64e-01	79.2%	67.0%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.69	47.0	4.30e-01	71.4%	53.9%
1wpaA01	6.10.140.340	Special › Helix non-globular › Helix Hairpins ›	0.66	45.0	4.11e-01	70.1%	80.8%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	47.0	4.57e-01	75.3%	100.0%
1nfvA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.66	50.0	3.90e-01	81.8%	81.7%
2w0gA00	1.20.58.610	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain	0.60	51.0	4.34e-01	94.8%	66.7%
1fp1D02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	48.0	3.46e-01	92.2%	67.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3275105	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.78	58.0	4.05e-01	77.9%	47.8%
3638386	603.1.1.111 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N	0.73	56.0	4.98e-01	80.5%	72.4%
4955292	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	49.0	4.07e-01	75.3%	89.2%
3669330	604.1.1.148 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N	0.68	50.0	4.87e-01	77.9%	90.6%
3491658	5000.3.1.1 ↗	alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2	0.61	44.0	3.57e-01	79.2%	43.0%
4554821	101.11.1.0 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	0.57	42.0	4.19e-01	79.2%	91.3%
4124891	101.11.1.0 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	0.56	42.0	3.95e-01	80.5%	88.4%
3369741	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.54	41.0	3.26e-01	79.2%	52.7%
3332710	4156.1.1.2 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C	0.53	40.0	2.85e-01	79.2%	37.3%
3339599	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	44.0	3.67e-01	100.0%	81.3%