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HQ634157.1__AGH32171.1__VPHG_00104__00104

Bact-Vir

HQ634157.1__AGH32171.1__VPHG_00104__00104

Identity

Accession:
HQ634157 ↗
Kingdom:
phage

Quality

63.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 93-183
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w8kA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.78 56.0 4.28e-01 74.7% 38.9%
6k6iA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.75 53.0 3.98e-01 73.6% 100.0%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.75 61.0 5.19e-01 86.8% 95.8%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.74 57.0 4.80e-01 81.3% 78.8%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.71 55.0 5.06e-01 82.4% 96.6%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.70 53.0 4.13e-01 81.3% 87.3%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 55.0 4.59e-01 85.7% 75.6%
7dswA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.67 47.0 3.02e-01 72.5% 18.3%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.66 48.0 4.94e-01 75.8% 97.6%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 46.0 4.30e-01 72.5% 68.5%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.65 52.0 3.72e-01 86.8% 92.4%
2yvkA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.64 49.0 4.18e-01 81.3% 50.0%
1a7vA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.64 45.0 4.03e-01 72.5% 72.0%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.63 44.0 3.96e-01 71.4% 57.6%
2c42A06 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.63 49.0 3.20e-01 82.4% 25.5%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.63 46.0 3.49e-01 76.9% 69.7%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.62 48.0 4.07e-01 83.5% 66.9%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.62 42.0 3.65e-01 70.3% 54.9%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.61 44.0 3.34e-01 75.8% 66.5%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.60 46.0 4.32e-01 82.4% 96.4%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.59 42.0 4.07e-01 73.6% 80.0%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 3.61e-01 83.5% 75.1%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.58 40.0 4.10e-01 70.3% 75.9%
3b8mC01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.58 40.0 3.39e-01 71.4% 91.4%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 49.0 4.33e-01 96.7% 67.9%
3qbmB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.39e-01 89.0% 78.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956930 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 49.0 3.52e-01 86.8% 23.3%
4001307 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.79 57.0 6.05e-01 81.3% 85.0%
4886450 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.78 58.0 6.22e-01 78.0% 98.8%
4034213 632.2.1.5 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.77 53.0 5.68e-01 71.4% 100.0%
4986966 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.77 55.0 4.55e-01 74.7% 71.6%
3236318 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.75 51.0 5.28e-01 75.8% 74.1%
3510767 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.75 66.0 3.96e-01 96.7% 61.0%
4034211 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.74 53.0 4.70e-01 73.6% 88.0%
3595840 3343.1.1.0 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) 0.74 66.0 3.99e-01 97.8% 71.9%
4582075 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.73 56.0 5.65e-01 80.2% 94.4%
5066728 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.73 52.0 5.35e-01 73.6% 82.4%
3437020 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.72 52.0 4.31e-01 74.7% 71.6%
3394102 3343.1.1.3 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_N_terminal 0.71 61.0 3.69e-01 93.4% 69.0%
3775856 3343.1.1.4 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal, GCP_N_terminal, GCP5-Mod21_C 0.71 63.0 3.77e-01 97.8% 65.5%
3496340 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.71 53.0 3.59e-01 79.1% 51.3%
5053994 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.71 48.0 5.23e-01 70.3% 100.0%
3621106 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 56.0 4.15e-01 84.6% 39.6%
4545557 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.71 63.0 3.81e-01 98.9% 72.0%
4031203 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.71 51.0 5.41e-01 74.7% 98.8%
3185507 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.70 49.0 5.15e-01 73.6% 100.0%
5069662 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 50.0 5.52e-01 78.0% 98.6%
3989535 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.69 51.0 5.08e-01 78.0% 95.8%
5071060 632.15.1.4 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.67 55.0 5.46e-01 87.9% 95.8%
3413026 103.4.1.3 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.64 44.0 4.91e-01 70.3% 95.7%
4034571 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.64 44.0 4.83e-01 71.4% 100.0%
3683696 5073.1.2.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.64 48.0 3.50e-01 81.3% 71.5%
3867165 3871.1.1.0 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.64 51.0 4.46e-01 86.8% 74.3%
5060252 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.63 48.0 4.95e-01 81.3% 98.8%
3462011 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 44.0 4.58e-01 72.5% 94.1%
4941976 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 44.0 4.14e-01 72.5% 81.8%
3926473 3226.1.1.2 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.62 50.0 3.29e-01 90.1% 19.5%
3928204 7062.1.1.0 alpha bundles › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein 0.60 45.0 4.12e-01 84.6% 60.8%
3870373 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.60 43.0 4.13e-01 75.8% 75.2%
3423943 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.59 40.0 4.31e-01 70.3% 92.5%
3706210 7015.1.1.1 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.59 47.0 3.55e-01 85.7% 76.4%
3563012 142.1.1.22 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C 0.58 43.0 4.61e-01 79.1% 96.2%
4937201 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.55 38.0 3.90e-01 72.5% 78.9%
D2 medium residues 208-303
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.80 58.0 6.37e-01 75.0% 98.7%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.67 54.0 4.75e-01 88.5% 95.9%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.67 49.0 4.68e-01 77.1% 66.7%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.64 55.0 4.51e-01 95.8% 61.8%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.64 52.0 4.38e-01 87.5% 75.3%
8hp8A01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.63 55.0 4.71e-01 96.9% 81.7%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.60 47.0 4.09e-01 86.5% 74.4%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.60 51.0 4.08e-01 93.8% 80.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 48.0 4.61e-01 87.5% 94.6%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 47.0 4.61e-01 84.4% 94.2%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 45.0 4.00e-01 83.3% 90.0%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.58 45.0 3.75e-01 85.4% 70.7%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 4.15e-01 88.5% 88.1%
3m66A00 1.25.70.10 Mainly Alpha › Alpha Horseshoe › Transcription termination factor 3, mitochondrial › Transcription termination factor 3, mitochondrial 0.56 47.0 3.54e-01 95.8% 47.4%
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.49e-01 94.8% 93.8%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 38.0 3.43e-01 83.3% 47.6%
4iu9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 38.0 3.02e-01 70.8% 53.2%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.56 43.0 3.26e-01 83.3% 87.9%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.55 48.0 4.46e-01 100.0% 85.9%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 37.0 3.83e-01 71.9% 83.7%
2vsqA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 46.0 3.46e-01 100.0% 92.1%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 40.0 2.97e-01 84.4% 82.3%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 46.0 3.68e-01 100.0% 66.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963765 159.1.2.5 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.88 81.0 6.29e-01 97.9% 75.3%
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.79 70.0 5.99e-01 100.0% 61.3%
3964630 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.73 61.0 5.12e-01 90.6% 71.3%
5025739 4953.1.1.2 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.69 42.0 4.69e-01 99.0% 77.3%
4999090 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 42.0 3.87e-01 75.0% 73.1%
5020960 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.58 51.0 3.48e-01 99.0% 41.4%
3781229 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 46.0 4.04e-01 85.4% 81.4%
3273891 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 51.0 4.74e-01 99.0% 96.7%
4225836 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.56 49.0 4.49e-01 100.0% 91.4%
4932398 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.55 42.0 4.49e-01 84.4% 91.8%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.54 48.0 3.54e-01 100.0% 81.2%