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HQ634157.1__AGH32246.1__VPHG_00183__00179

Bact-Vir

HQ634157.1__AGH32246.1__VPHG_00183__00179

Identity

Accession:
HQ634157 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_11895-B1

TaxID: 754075

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: rep: MG592441.1__AUR84869.1__NVP1063O_202__00202__D5-59
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p38A01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.84 59.0 4.94e-01 73.2% 66.7%
1lp8A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.72 61.0 4.25e-01 94.6% 31.5%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.66 57.0 4.11e-01 92.9% 64.9%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.64 53.0 4.52e-01 100.0% 65.7%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 52.0 4.16e-01 100.0% 66.4%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 41.0 2.60e-01 71.4% 13.1%
3q9tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 46.0 3.07e-01 82.1% 71.8%
4g1iA02 3.30.300.170 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.62 49.0 4.62e-01 92.9% 81.7%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 44.0 3.10e-01 76.8% 98.4%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.62 53.0 3.98e-01 94.6% 71.2%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.60 44.0 2.74e-01 85.7% 35.9%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.59 42.0 3.90e-01 76.8% 59.2%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 2.68e-01 91.1% 14.6%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 47.0 4.24e-01 94.6% 71.4%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 3.48e-01 76.8% 55.6%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.57e-01 100.0% 53.9%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.57 45.0 3.82e-01 91.1% 68.0%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.57 45.0 4.50e-01 91.1% 93.0%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 3.82e-01 96.4% 99.2%
1n67A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.48e-01 92.9% 44.0%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.40e-01 92.9% 42.8%
1r17B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.34e-01 92.9% 40.7%
4zpjA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 39.0 2.76e-01 73.2% 94.2%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 45.0 3.65e-01 98.2% 84.8%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.42e-01 94.6% 44.1%
1b9wA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 34.0 3.51e-01 73.2% 64.7%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.21e-01 89.3% 48.0%
1b9wA02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.54 34.0 3.85e-01 80.4% 94.7%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.16e-01 92.9% 92.5%
1vypX00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 43.0 2.67e-01 91.1% 29.8%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.52 40.0 2.95e-01 92.9% 32.3%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 2.48e-01 75.0% 87.9%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.49e-01 96.4% 64.1%
4n0rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 41.0 2.61e-01 100.0% 16.5%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 43.0 3.32e-01 100.0% 54.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280676 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.74 54.0 3.79e-01 92.9% 24.4%
3281747 213.5.1.1 ↗ a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.73 64.0 5.21e-01 100.0% 78.1%
3831261 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.66 55.0 3.79e-01 100.0% 86.7%
3940660 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.65 52.0 2.99e-01 100.0% 8.8%
4139105 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.65 46.0 3.22e-01 75.0% 29.4%
3408978 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.64 52.0 4.02e-01 100.0% 57.3%
3973814 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 47.0 2.86e-01 82.1% 72.0%
4034385 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.64 54.0 4.40e-01 98.2% 76.4%
3925273 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 45.0 3.60e-01 78.6% 47.5%
4163835 11.1.5.56 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL1 0.63 49.0 3.68e-01 92.9% 33.8%
3392909 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.62 50.0 3.90e-01 100.0% 58.0%
3412438 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.62 50.0 3.84e-01 100.0% 58.7%
3188926 2002.1.1.32 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN 0.62 51.0 3.12e-01 96.4% 17.3%
4053035 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.61 50.0 4.51e-01 100.0% 95.3%
5030513 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.60 48.0 3.56e-01 92.9% 32.3%
3722558 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.58 50.0 4.53e-01 100.0% 75.0%
4887368 389.1.1.15 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 0.58 36.0 3.62e-01 78.6% 60.7%
4002247 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 32.0 3.89e-01 73.2% 96.7%
3958367 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 43.0 4.39e-01 89.3% 96.4%
3830120 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.56 45.0 3.25e-01 100.0% 70.2%
4018269 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.56 46.0 3.25e-01 94.6% 72.8%
3861438 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.55 45.0 3.63e-01 94.6% 96.7%
3444901 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.55 37.0 2.69e-01 71.4% 26.3%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.55 46.0 3.36e-01 100.0% 50.3%
5002760 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 40.0 3.82e-01 82.1% 77.1%
91487 389.1.1.15 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 0.55 33.0 3.56e-01 73.2% 73.3%
5079140 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.23e-01 76.8% 84.5%
3941611 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 45.0 2.65e-01 100.0% 79.5%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.54 43.0 3.61e-01 92.9% 91.4%
4947543 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.54 38.0 3.51e-01 87.5% 56.8%
5045688 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.53 37.0 2.45e-01 76.8% 21.4%
3175463 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.53 37.0 2.60e-01 75.0% 33.0%
3242234 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 45.0 2.66e-01 100.0% 26.0%
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 44.0 3.14e-01 98.2% 91.9%
3523526 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.52 43.0 3.54e-01 96.4% 96.4%
3257938 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.52 38.0 3.74e-01 80.4% 76.7%
3295884 101.1.2.132 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.52 37.0 3.42e-01 83.9% 85.9%
3977412 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 34.0 3.51e-01 87.5% 79.6%
3227063 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.51 40.0 2.63e-01 92.9% 50.7%
5019906 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.50 35.0 2.34e-01 73.2% 26.5%
3211387 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.50 38.0 3.24e-01 87.5% 46.7%
3301434 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.50 39.0 3.54e-01 92.9% 61.2%
3824278 101.1.2.132 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.50 36.0 3.28e-01 82.1% 82.4%