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HQ634194.1__AGH57098.1__VPNG_00074__00074

Bact-Vir

HQ634194.1__AGH57098.1__VPNG_00074__00074

Identity

Accession:
HQ634194 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Stoningtonvirus› Vibrio_phage_VBP47

TaxID: 754073

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-88
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.75 32.0 3.44e-01 80.5% 44.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 3.99e-01 78.2% 72.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 4.05e-01 80.5% 74.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.67e-01 78.2% 89.2%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.28e-01 85.1% 72.1%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 55.0 4.48e-01 100.0% 91.9%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 32.0 4.22e-01 75.9% 93.9%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.60 33.0 3.94e-01 78.2% 78.7%
1eh7A01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.60 37.0 4.13e-01 71.3% 78.6%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 34.0 3.49e-01 92.0% 55.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.43e-01 79.3% 96.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.59 30.0 3.87e-01 78.2% 100.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.49e-01 92.0% 98.3%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 40.0 3.18e-01 71.3% 64.5%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 3.65e-01 78.2% 99.3%
3akhA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 41.0 3.59e-01 77.0% 100.0%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.17e-01 79.3% 83.6%
1wrjA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.56 34.0 3.83e-01 71.3% 79.1%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 33.0 3.45e-01 78.2% 65.4%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 4.43e-01 77.0% 100.0%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 42.0 3.56e-01 82.8% 98.7%
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.54 37.0 3.83e-01 70.1% 84.0%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 4.02e-01 80.5% 85.7%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 34.0 3.91e-01 78.2% 90.6%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.88e-01 78.2% 84.3%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 33.0 3.84e-01 96.6% 93.5%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.44e-01 80.5% 61.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.95e-01 81.6% 91.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.63 39.0 4.82e-01 80.5% 98.2%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 37.0 4.23e-01 92.0% 78.5%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.63 35.0 4.09e-01 78.2% 77.4%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.61 37.0 4.60e-01 80.5% 98.2%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.60 35.0 4.49e-01 78.2% 100.0%
3979087 4100.1.1.7 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.59 41.0 4.50e-01 80.5% 90.0%
5062226 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.57 43.0 3.30e-01 80.5% 61.0%
5011877 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 45.0 4.54e-01 89.7% 100.0%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.54 40.0 2.97e-01 82.8% 30.0%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 40.0 3.49e-01 80.5% 64.6%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 38.0 3.56e-01 77.0% 68.2%
3242374 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 39.0 3.69e-01 80.5% 76.9%
3250014 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.52 38.0 3.18e-01 100.0% 47.1%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.52 41.0 4.30e-01 95.4% 94.9%