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HQ641346.1__ADX87800.1__TU12-16_00230__00046

Bact-Vir

HQ641346.1__ADX87800.1__TU12-16_00230__00046

Identity

Accession:
HQ641346 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Icepovirus› Vibrio_phage_ICP2_2006_A

TaxID: 979534

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-107
PDB
Domain cluster: rep: NC_048754.1__YP_009844237.1__HWC10_gp082__00082__D98-181
D2 high residues 113-165
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 71.0 6.51e-01 100.0% 70.6%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.65 42.0 4.12e-01 100.0% 60.0%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 51.0 3.83e-01 100.0% 91.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 48.0 4.84e-01 100.0% 100.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 46.0 4.08e-01 100.0% 63.4%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 41.0 3.31e-01 100.0% 43.1%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 34.0 3.47e-01 98.1% 66.7%
1mwrA03 3.30.1390.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 0.53 41.0 3.72e-01 83.0% 68.6%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 45.0 3.55e-01 100.0% 73.1%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 2.66e-01 94.3% 83.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.85 71.0 6.47e-01 100.0% 69.6%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.73 60.0 5.22e-01 100.0% 58.8%
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.72 63.0 6.31e-01 100.0% 98.1%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.66 53.0 4.93e-01 100.0% 71.0%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.66 51.0 5.28e-01 100.0% 94.0%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.65 51.0 5.20e-01 98.1% 96.0%
3223367 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 47.0 4.51e-01 100.0% 92.3%
None — 0.54 45.0 3.24e-01 100.0% 73.1%
3245932 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 37.0 3.93e-01 100.0% 88.9%
5082510 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 34.0 3.76e-01 100.0% 87.5%
3302473 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 39.0 2.64e-01 88.7% 34.3%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.99e-01 100.0% 90.0%