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HQ641380.1__ADU79163.1__EcP1_gp12__00012
Bact-VirHQ641380.1__ADU79163.1__EcP1_gp12__00012
Identity
- Accession:
- HQ641380 ↗
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Taxonomy
TaxID: 942016
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.65 | 55.0 | 4.40e-01 | 100.0% | 48.1% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 53.0 | 3.73e-01 | 100.0% | 41.3% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.61 | 44.0 | 3.52e-01 | 79.6% | 73.6% |
| 4dixA01 | 2.60.40.2700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 41.0 | 3.52e-01 | 100.0% | 44.8% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 42.0 | 2.70e-01 | 77.8% | 78.1% |
| 3b49A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.56 | 51.0 | 3.39e-01 | 100.0% | 52.5% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.06e-01 | 70.4% | 95.0% |
| 2wjnM01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.55 | 39.0 | 3.07e-01 | 81.5% | 81.1% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.55 | 42.0 | 3.25e-01 | 88.9% | 66.2% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 42.0 | 2.68e-01 | 87.0% | 84.2% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 43.0 | 3.20e-01 | 100.0% | 32.2% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.54 | 44.0 | 3.73e-01 | 100.0% | 84.3% |
| 3hkoA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 39.0 | 2.69e-01 | 83.3% | 59.7% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 42.0 | 3.13e-01 | 87.0% | 66.0% |
| 4lrjA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 39.0 | 3.37e-01 | 79.6% | 67.8% |
| 2v50D07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.53 | 44.0 | 3.78e-01 | 100.0% | 88.4% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.52 | 45.0 | 3.23e-01 | 98.1% | 77.8% |
| 2z5bA00 | 3.30.230.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 40.0 | 3.06e-01 | 85.2% | 38.6% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.52 | 44.0 | 3.67e-01 | 96.3% | 90.6% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 3.59e-01 | 94.4% | 55.9% |
| 2g3wA00 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.51 | 36.0 | 2.66e-01 | 79.6% | 69.3% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 41.0 | 2.96e-01 | 100.0% | 87.4% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.51 | 43.0 | 2.86e-01 | 100.0% | 27.9% |
| 1cjaA02 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.50 | 42.0 | 3.03e-01 | 100.0% | 57.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945327 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.69 | 56.0 | 5.15e-01 | 88.9% | 90.0% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.64 | 46.0 | 3.70e-01 | 79.6% | 76.5% |
| 3566423 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.63 | 44.0 | 2.93e-01 | 74.1% | 54.9% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.62 | 43.0 | 2.73e-01 | 74.1% | 57.7% |
| 4975146 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 43.0 | 3.31e-01 | 79.6% | 31.9% |
| 3178990 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.59 | 43.0 | 2.52e-01 | 75.9% | 24.0% |
| 5083040 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.58 | 52.0 | 4.25e-01 | 100.0% | 87.0% |
| 3817648 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.58 | 47.0 | 3.46e-01 | 94.4% | 73.8% |
| 3932304 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 46.0 | 3.37e-01 | 90.7% | 52.5% |
| 3798608 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.57 | 49.0 | 3.04e-01 | 100.0% | 20.0% |
| 5018085 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 3.02e-01 | 87.0% | 43.8% |
| 3940439 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 44.0 | 2.71e-01 | 88.9% | 97.1% |
| 4937952 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.55 | 42.0 | 2.78e-01 | 100.0% | 18.5% |
| 3717261 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 42.0 | 2.82e-01 | 88.9% | 90.8% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 41.0 | 3.33e-01 | 100.0% | 41.8% |
| 5017116 | 11.1.1.1403 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 | 0.54 | 45.0 | 3.39e-01 | 100.0% | 43.8% |
| 3593683 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.54 | 43.0 | 2.86e-01 | 100.0% | 32.5% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.54 | 44.0 | 2.61e-01 | 94.4% | 60.9% |
| 3853251 | 2492.1.1.19 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › STIL_N | 0.53 | 42.0 | 2.99e-01 | 98.1% | 51.6% |
| 3937237 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 39.0 | 2.80e-01 | 79.6% | 61.2% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.53 | 44.0 | 4.12e-01 | 100.0% | 78.6% |
| 5028275 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 41.0 | 2.57e-01 | 87.0% | 35.1% |
| 3825952 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.53 | 38.0 | 3.19e-01 | 100.0% | 41.9% |
| 3758281 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.52 | 43.0 | 3.07e-01 | 96.3% | 55.6% |
| 5044314 | 3203.1.1.0 ↗ | a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase | 0.52 | 45.0 | 3.85e-01 | 100.0% | 65.6% |
| 3884004 | 11.1.1.1016 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30511 | 0.51 | 43.0 | 3.44e-01 | 100.0% | 47.6% |
| 4240651 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.51 | 35.0 | 2.81e-01 | 70.4% | 52.0% |
| 4227571 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.51 | 32.0 | 2.63e-01 | 81.5% | 33.0% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.51 | 41.0 | 2.86e-01 | 94.4% | 93.2% |
| 3486149 | 221.15.1.1 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase › DUF2340 | 0.50 | 40.0 | 3.95e-01 | 92.6% | 85.0% |