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HQ641380.1__ADU79168.1__EcP1_gp17__00017

Bact-Vir

HQ641380.1__ADU79168.1__EcP1_gp17__00017

Identity

Accession:
HQ641380 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Eceepunavirus› Enterobacter_phage_EcP1

TaxID: 942016

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24233.2 best DUF7446 38.8 9.90e-10 100.0% 62.9%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 3.96e-01 71.2% 65.3%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 40.0 3.93e-01 78.8% 58.6%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.62 36.0 3.78e-01 73.1% 63.0%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 45.0 4.00e-01 82.7% 56.2%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 47.0 4.46e-01 90.4% 74.2%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 43.0 3.81e-01 76.9% 57.9%
4j5tA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 49.0 2.89e-01 96.2% 16.5%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 35.0 3.43e-01 71.2% 52.7%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 34.0 3.36e-01 71.2% 50.9%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.38e-01 75.0% 93.8%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.58 38.0 3.69e-01 82.7% 58.1%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.94e-01 80.8% 92.3%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 35.0 2.90e-01 80.8% 33.0%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 37.0 3.17e-01 76.9% 39.1%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 2.95e-01 76.9% 30.6%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.21e-01 86.5% 40.1%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 41.0 2.83e-01 86.5% 85.2%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.56 45.0 3.62e-01 100.0% 84.3%
5mmjp00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.55 42.0 3.69e-01 84.6% 85.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.50e-01 88.5% 74.0%
1r0aH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.13e-01 80.8% 69.9%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.54 43.0 3.06e-01 100.0% 63.3%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 33.0 2.75e-01 75.0% 32.6%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 35.0 3.47e-01 76.9% 63.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.12e-01 84.6% 67.8%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.34e-01 98.1% 41.0%
1jbjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.69e-01 88.5% 98.7%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 34.0 2.95e-01 71.2% 37.8%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 42.0 3.24e-01 88.5% 50.8%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 36.0 3.02e-01 94.2% 39.2%
1p6vA00 2.40.280.10 Mainly Beta › Beta Barrel › Small Protein B; Chain: A; › Small protein B 0.51 35.0 2.69e-01 73.1% 58.4%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 32.0 2.54e-01 71.2% 25.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3804385 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 40.0 3.85e-01 73.1% 53.3%
3844241 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 48.0 4.43e-01 100.0% 60.0%
4978676 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.63 48.0 4.24e-01 86.5% 58.7%
5037179 236.3.1.1 ↗ beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.62 47.0 4.36e-01 80.8% 75.4%
4948486 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.61 41.0 4.17e-01 71.2% 72.0%
4075142 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 40.0 2.96e-01 78.8% 26.7%
3396002 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 43.0 2.97e-01 100.0% 20.0%
3623534 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.95e-01 88.5% 97.8%
3413411 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.59 40.0 2.31e-01 94.2% 7.5%
3604264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 35.0 2.86e-01 75.0% 32.0%
3241605 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 50.0 3.11e-01 100.0% 40.0%
3518993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 34.0 4.06e-01 75.0% 88.6%
4189433 223.1.1.81 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.56 47.0 3.24e-01 100.0% 26.5%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 40.0 3.40e-01 78.8% 44.4%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.56 40.0 4.02e-01 86.5% 74.5%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.55 41.0 3.97e-01 86.5% 70.0%
3484018 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.63e-01 100.0% 27.4%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.25e-01 92.3% 39.2%
3427431 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 31.0 3.66e-01 73.1% 100.0%
3283746 330.1.1.16 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 0.53 38.0 3.31e-01 84.6% 50.0%
4237388 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 45.0 2.75e-01 100.0% 50.8%
3790199 64.5.1.0 ↗ beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.53 41.0 3.93e-01 86.5% 73.3%
3710596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 2.98e-01 86.5% 40.0%
3230371 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.52 38.0 3.05e-01 92.3% 37.3%
4131948 220.1.1.186 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.52 39.0 3.32e-01 98.1% 45.0%
3501287 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 33.0 3.65e-01 73.1% 85.0%
3482406 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.52 33.0 3.76e-01 73.1% 97.1%
3398694 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.52 40.0 3.18e-01 84.6% 42.9%
4923630 108.1.1.128 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DM10_dom 0.52 38.0 3.00e-01 92.3% 35.5%
3517405 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.45e-01 78.8% 70.0%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.56e-01 86.5% 61.3%
3629138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.89e-01 86.5% 75.0%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 39.0 3.12e-01 98.1% 42.2%
3496098 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 41.0 2.98e-01 94.2% 88.4%
3910776 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 38.0 2.65e-01 84.6% 42.7%