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HQ683709.1__ADZ31512.1__PaVLD_ORF005R__00005
Bact-VirHQ683709.1__ADZ31512.1__PaVLD_ORF005R__00005
Identity
- Accession:
- HQ683709 ↗
- Kingdom:
- phage
Quality
60.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-136
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 47.0 | 4.46e-01 | 74.5% | 51.2% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 52.0 | 5.78e-01 | 70.9% | 86.0% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 50.0 | 4.57e-01 | 71.8% | 52.1% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 4.46e-01 | 72.7% | 50.0% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 4.45e-01 | 72.7% | 49.7% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 53.0 | 5.45e-01 | 73.6% | 77.1% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 52.0 | 5.93e-01 | 74.5% | 100.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 52.0 | 5.08e-01 | 74.5% | 82.5% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 49.0 | 4.51e-01 | 74.5% | 54.2% |
| 2nnnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 48.0 | 4.49e-01 | 71.8% | 56.1% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 47.0 | 4.97e-01 | 70.9% | 76.0% |
| 4p9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 41.0 | 5.05e-01 | 70.0% | 94.0% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 46.0 | 4.32e-01 | 71.8% | 54.4% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 46.0 | 4.15e-01 | 71.8% | 48.4% |
| 2p4wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 50.0 | 5.15e-01 | 73.6% | 90.3% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 42.0 | 5.18e-01 | 74.5% | 100.0% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 46.0 | 4.93e-01 | 73.6% | 78.7% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 45.0 | 5.22e-01 | 79.1% | 94.8% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 4.89e-01 | 76.4% | 77.4% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.55e-01 | 70.9% | 75.8% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 41.0 | 4.60e-01 | 70.0% | 81.7% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 5.03e-01 | 71.8% | 91.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.63 | 33.0 | 3.88e-01 | 83.6% | 72.4% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.61 | 28.0 | 3.96e-01 | 90.9% | 90.6% |
| 2mh9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.44e-01 | 89.1% | 91.3% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.94 | 69.0 | 7.69e-01 | 76.4% | 92.2% |
| 4033792 | 101.1.2.214 ↗ | alpha arrays › HTH › HTH › winged helix domain › DnaD_N | 0.78 | 56.0 | 5.21e-01 | 74.5% | 64.4% |
| 5023661 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.78 | 56.0 | 5.30e-01 | 74.5% | 69.0% |
| 5082809 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.76 | 55.0 | 5.62e-01 | 74.5% | 81.0% |
| 5016351 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.75 | 54.0 | 5.39e-01 | 74.5% | 74.8% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 55.0 | 4.70e-01 | 76.4% | 50.3% |
| 5044596 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.75 | 50.0 | 5.34e-01 | 70.0% | 78.7% |
| 3602715 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.75 | 54.0 | 5.17e-01 | 74.5% | 76.0% |
| 5057064 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 52.0 | 5.25e-01 | 75.5% | 71.8% |
| 4241167 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.74 | 54.0 | 4.63e-01 | 75.5% | 56.5% |
| 4965036 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.74 | 55.0 | 5.47e-01 | 77.3% | 74.8% |
| 5005582 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.74 | 53.0 | 5.19e-01 | 74.5% | 70.0% |
| 3516793 | 101.1.2.197 ↗ | alpha arrays › HTH › HTH › winged helix domain › APAF-1-like_WHD | 0.74 | 51.0 | 5.29e-01 | 71.8% | 78.1% |
| 5019432 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.74 | 53.0 | 5.02e-01 | 74.5% | 65.4% |
| 5040032 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.74 | 51.0 | 5.28e-01 | 72.7% | 75.2% |
| 415845 | 101.1.2.214 ↗ | alpha arrays › HTH › HTH › winged helix domain › DnaD_N | 0.74 | 53.0 | 5.13e-01 | 74.5% | 80.5% |
| 5078033 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.73 | 50.0 | 5.41e-01 | 70.0% | 92.6% |
| 4990780 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 53.0 | 5.29e-01 | 75.5% | 83.5% |
| 4965203 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 53.0 | 5.37e-01 | 74.5% | 77.8% |
| 5054122 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 53.0 | 4.66e-01 | 75.5% | 52.5% |
| 5016950 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 49.0 | 5.40e-01 | 70.0% | 84.4% |
| 5048088 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 52.0 | 5.15e-01 | 74.5% | 71.2% |
| 4992769 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 53.0 | 5.30e-01 | 76.4% | 74.5% |
| 4944959 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 53.0 | 5.31e-01 | 74.5% | 78.2% |
| 4982081 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 53.0 | 5.23e-01 | 74.5% | 74.8% |
| 5010738 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 53.0 | 5.21e-01 | 75.5% | 76.3% |
| 4948149 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 52.0 | 5.27e-01 | 74.5% | 77.3% |
| 4938001 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.72 | 50.0 | 5.39e-01 | 74.5% | 83.2% |
| 5027611 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 48.0 | 5.65e-01 | 76.4% | 100.0% |
| 5062630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 47.0 | 5.39e-01 | 70.0% | 90.0% |
| 5063201 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 54.0 | 4.88e-01 | 77.3% | 75.0% |
| 5080684 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 53.0 | 4.69e-01 | 76.4% | 55.5% |
| 4937951 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.72 | 52.0 | 5.45e-01 | 75.5% | 86.0% |
| 4979194 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 50.0 | 5.34e-01 | 74.5% | 83.2% |
| 5007541 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 52.0 | 5.31e-01 | 74.5% | 80.0% |
| 5068497 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.71 | 51.0 | 5.05e-01 | 74.5% | 72.0% |
| 3289064 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.71 | 50.0 | 4.48e-01 | 73.6% | 52.7% |
| 5006003 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 51.0 | 5.01e-01 | 74.5% | 70.0% |
| 4978825 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 51.0 | 4.99e-01 | 74.5% | 70.8% |
| 5059461 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 51.0 | 4.91e-01 | 74.5% | 66.4% |
| 4971747 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 52.0 | 5.25e-01 | 77.3% | 76.4% |
| 5075111 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.71 | 52.0 | 4.73e-01 | 76.4% | 60.4% |
| 5035027 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 52.0 | 5.04e-01 | 75.5% | 81.5% |
| 4943632 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 51.0 | 4.95e-01 | 74.5% | 69.2% |
| 4979815 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.71 | 48.0 | 5.21e-01 | 70.0% | 84.4% |
| 3290058 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.70 | 49.0 | 4.49e-01 | 73.6% | 54.5% |
| 3977793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 49.0 | 5.28e-01 | 71.8% | 89.4% |
| 5032906 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.70 | 52.0 | 4.76e-01 | 76.4% | 71.4% |
| 4646072 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 51.0 | 4.40e-01 | 75.5% | 50.6% |
| 4976807 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.70 | 51.0 | 4.86e-01 | 74.5% | 68.0% |
| 5070883 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 51.0 | 5.56e-01 | 75.5% | 92.2% |
| 2687 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.70 | 48.0 | 4.87e-01 | 70.9% | 70.6% |
| 5075809 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 59.0 | 4.34e-01 | 90.9% | 71.0% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 51.0 | 4.46e-01 | 76.4% | 50.9% |
| 4978090 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.70 | 48.0 | 3.84e-01 | 70.9% | 38.6% |
| 4964147 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.70 | 50.0 | 5.30e-01 | 73.6% | 95.8% |
| 4622104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 5.25e-01 | 70.9% | 91.1% |
| 4985036 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.69 | 51.0 | 4.38e-01 | 76.4% | 49.4% |
| 4963911 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.69 | 48.0 | 4.91e-01 | 70.9% | 85.7% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.69 | 51.0 | 4.42e-01 | 76.4% | 50.9% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.69 | 51.0 | 4.41e-01 | 76.4% | 50.9% |
| 5080131 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.69 | 51.0 | 4.94e-01 | 76.4% | 70.0% |
| 5051534 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 47.0 | 3.98e-01 | 70.9% | 44.9% |
| 4979490 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.69 | 48.0 | 4.70e-01 | 71.8% | 75.0% |
| 4945942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 4.80e-01 | 71.8% | 83.6% |
| 4971297 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.76e-01 | 70.0% | 83.8% |
| 4961529 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.68 | 48.0 | 5.12e-01 | 73.6% | 98.9% |
| 5076142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.95e-01 | 70.0% | 82.1% |
| 4933997 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.68 | 47.0 | 4.60e-01 | 71.8% | 76.7% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.67 | 49.0 | 4.17e-01 | 76.4% | 46.9% |
| 4998031 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.67 | 47.0 | 4.02e-01 | 72.7% | 54.3% |
| 5039869 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.67 | 46.0 | 4.47e-01 | 74.5% | 64.2% |
| 3614124 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 4.78e-01 | 74.5% | 82.1% |
| 4967969 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.65 | 48.0 | 4.21e-01 | 77.3% | 60.0% |
| 4954852 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.64 | 47.0 | 4.07e-01 | 77.3% | 89.0% |
| 4945700 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.29e-01 | 83.6% | 68.0% |
| 3613337 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.84e-01 | 99.1% | 86.4% |
| 3594072 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 53.0 | 4.76e-01 | 100.0% | 96.8% |
| 3518019 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.57 | 46.0 | 4.30e-01 | 88.2% | 79.3% |
| 3608304 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 3.91e-01 | 70.9% | 80.9% |
| 5048236 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.53 | 47.0 | 3.22e-01 | 96.4% | 99.7% |
D2
high
residues 260-386