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HQ683709.1__ADZ31520.1__PaVLD_ORF013R__00013

Bact-Vir

HQ683709.1__ADZ31520.1__PaVLD_ORF013R__00013

Identity

Accession:
HQ683709 ↗
Kingdom:
phage

Quality

52.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-54
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.99 93.0 8.33e-01 100.0% 75.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.94 79.0 7.83e-01 89.4% 93.9%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.94 85.0 5.70e-01 100.0% 29.5%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.94 79.0 5.54e-01 100.0% 32.8%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.94 87.0 6.60e-01 100.0% 94.9%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.93 87.0 7.54e-01 100.0% 69.1%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.93 85.0 5.41e-01 100.0% 23.7%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.92 81.0 6.49e-01 100.0% 51.7%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.92 83.0 6.90e-01 100.0% 65.4%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.91 82.0 7.43e-01 100.0% 76.2%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.90 81.0 5.24e-01 100.0% 23.9%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.90 76.0 6.38e-01 91.5% 73.3%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.90 81.0 7.37e-01 100.0% 77.0%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.89 63.0 6.00e-01 80.9% 64.8%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.88 79.0 5.78e-01 100.0% 39.2%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.86 63.0 3.79e-01 87.2% 12.5%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 73.0 6.06e-01 100.0% 75.6%
2nwbA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 75.0 4.68e-01 100.0% 20.3%
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.85 72.0 4.12e-01 100.0% 10.6%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.85 68.0 6.69e-01 89.4% 82.0%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.84 66.0 5.30e-01 83.0% 58.3%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.84 74.0 4.71e-01 100.0% 21.9%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.84 71.0 6.51e-01 100.0% 73.3%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.84 73.0 4.81e-01 97.9% 96.7%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.84 66.0 5.55e-01 87.2% 53.2%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 76.0 6.86e-01 100.0% 79.4%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 72.0 5.92e-01 100.0% 62.1%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 65.0 6.77e-01 100.0% 97.7%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 71.0 6.30e-01 100.0% 79.1%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.80 66.0 6.20e-01 100.0% 75.9%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.80 67.0 5.29e-01 95.7% 46.7%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.79 67.0 6.52e-01 97.9% 84.6%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 64.0 5.61e-01 91.5% 60.9%
3kdrA01 1.20.1270.210 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.79 70.0 5.34e-01 100.0% 66.0%
2x1lA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.79 69.0 4.64e-01 100.0% 30.8%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.78 68.0 4.44e-01 95.7% 87.9%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 66.0 6.43e-01 100.0% 86.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.77 64.0 5.19e-01 100.0% 66.3%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.76 65.0 4.92e-01 97.9% 41.9%
2qvaA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.76 63.0 4.71e-01 100.0% 39.5%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.76 63.0 4.93e-01 100.0% 43.8%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.75 63.0 4.30e-01 100.0% 31.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 63.0 5.48e-01 100.0% 65.8%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 4.90e-01 100.0% 48.2%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.72 59.0 5.55e-01 100.0% 78.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.71 60.0 5.53e-01 100.0% 79.7%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 57.0 5.36e-01 97.9% 100.0%
4petA01 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.69 59.0 3.86e-01 100.0% 71.2%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 57.0 4.93e-01 100.0% 64.6%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 54.0 5.42e-01 100.0% 91.8%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 54.0 4.99e-01 100.0% 68.6%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 55.0 3.44e-01 100.0% 56.7%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 58.0 3.80e-01 100.0% 55.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.67 59.0 5.07e-01 100.0% 66.2%
2lo0A00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.67 50.0 5.14e-01 80.9% 97.8%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.63 50.0 3.70e-01 97.9% 87.4%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.62 50.0 4.29e-01 89.4% 65.3%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.58 45.0 4.37e-01 100.0% 81.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218199 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.99 94.0 7.31e-01 100.0% 52.2%
3623143 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.99 94.0 7.39e-01 100.0% 55.3%
3249849 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.99 93.0 6.78e-01 100.0% 42.7%
3464245 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.97 91.0 6.56e-01 100.0% 40.9%
3967403 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.96 90.0 7.94e-01 100.0% 93.8%
4473366 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.96 89.0 7.41e-01 100.0% 62.7%
4186143 604.11.1.1 alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.95 90.0 8.14e-01 100.0% 78.3%
4171766 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.95 89.0 6.93e-01 100.0% 60.0%
3221503 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.94 87.0 5.28e-01 100.0% 18.9%
3375405 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.94 88.0 5.91e-01 100.0% 31.3%
3382780 2006.1.1.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.94 88.0 5.06e-01 100.0% 13.4%
4396464 605.1.1.305 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Exonuc_VII_S 0.94 87.0 7.94e-01 100.0% 78.3%
2456957 192.13.1.1 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 0.93 86.0 8.07e-01 100.0% 83.9%
4645372 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.92 84.0 6.52e-01 100.0% 49.5%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.92 85.0 6.93e-01 100.0% 58.7%
3269731 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.91 83.0 6.09e-01 100.0% 44.3%
3484036 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.91 84.0 5.06e-01 100.0% 21.8%
4146694 192.29.1.277 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.91 85.0 7.49e-01 100.0% 75.4%
3343376 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.91 76.0 7.73e-01 95.7% 93.3%
5053090 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.90 81.0 7.46e-01 100.0% 78.3%
5038847 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.89 81.0 7.02e-01 100.0% 67.1%
3437690 109.4.1.1231 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_NAA35 0.88 77.0 7.62e-01 100.0% 92.0%
3550353 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.87 75.0 6.67e-01 100.0% 67.7%
3947564 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.85 74.0 6.69e-01 100.0% 73.8%
3869913 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.85 77.0 4.37e-01 100.0% 10.8%
3691039 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.84 77.0 6.32e-01 100.0% 58.7%
4363 605.8.1.1 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › SpoOE-like 0.83 71.0 6.75e-01 97.9% 89.5%
3256299 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 60.0 4.31e-01 100.0% 28.5%
3750377 605.1.1.254 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MRVI1 0.81 71.0 5.97e-01 100.0% 60.0%
3530780 310.2.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23 0.79 69.0 4.99e-01 100.0% 56.2%
3433598 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.79 67.0 4.86e-01 100.0% 34.3%
3613457 5076.2.1.9 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.78 68.0 4.23e-01 100.0% 19.6%
3876167 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 66.0 4.48e-01 100.0% 60.0%
4980095 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.75 65.0 5.03e-01 100.0% 81.9%
4353 605.4.1.1 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop 0.74 63.0 5.92e-01 100.0% 81.4%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.72 59.0 5.48e-01 100.0% 100.0%
3351064 540.1.1.1 few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.65 48.0 4.48e-01 85.1% 61.5%
3806609 540.1.1.1 few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.64 47.0 4.17e-01 85.1% 53.3%
5018026 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 53.0 5.27e-01 100.0% 90.0%
3712893 605.1.1.307 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CEP76_N 0.52 42.0 3.93e-01 100.0% 70.8%
D2 high residues 59-154
PDB