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HQ683709.1__ADZ31535.1__PaVLD_ORF028L__00028

Bact-Vir

HQ683709.1__ADZ31535.1__PaVLD_ORF028L__00028

Identity

Accession:
HQ683709 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 29.0 3.49e-01 79.6% 70.1%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 37.0 4.10e-01 74.5% 89.2%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 4.04e-01 86.7% 83.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.05e-01 80.6% 44.4%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 37.0 2.93e-01 72.4% 61.2%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 4.06e-01 87.8% 84.6%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.02e-01 74.5% 45.1%
3k0yA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.53 37.0 3.40e-01 98.0% 54.9%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 34.0 3.57e-01 74.5% 73.0%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.54e-01 74.5% 81.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 31.0 3.65e-01 75.5% 89.7%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.79e-01 100.0% 90.5%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.60e-01 88.8% 76.0%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.56e-01 75.5% 70.1%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 36.0 3.73e-01 91.8% 83.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033119 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.80 57.0 5.73e-01 91.8% 73.0%
3163642 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.78 64.0 6.14e-01 100.0% 77.3%
3505855 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 54.0 5.85e-01 90.8% 100.0%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.64 55.0 4.82e-01 95.9% 67.3%
5025451 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.58 36.0 3.45e-01 71.4% 54.5%
5011597 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.57 35.0 3.51e-01 70.4% 60.6%
3407270 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 36.0 3.94e-01 75.5% 85.3%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 33.0 3.43e-01 70.4% 64.4%
3722817 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.54 48.0 3.23e-01 100.0% 62.1%
4021486 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 48.0 3.26e-01 100.0% 61.9%
None 0.53 47.0 3.22e-01 100.0% 63.0%
5020004 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.52 32.0 3.57e-01 72.4% 78.7%
1823111 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.52 34.0 3.58e-01 95.9% 71.7%
3286733 3016.1.1.3 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 0.52 45.0 3.01e-01 99.0% 74.9%
2777205 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.51 33.0 3.43e-01 73.5% 68.8%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 36.0 3.58e-01 74.5% 71.0%
3213018 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 34.0 3.56e-01 73.5% 77.6%
1684874 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.50 29.0 3.10e-01 74.5% 64.3%
5062314 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.43e-01 83.7% 75.3%
4941685 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.50 32.0 3.63e-01 73.5% 90.0%
D2 high residues 104-171
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 50.0 4.75e-01 70.6% 65.8%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 50.0 4.89e-01 72.1% 100.0%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.71 50.0 4.01e-01 75.0% 90.5%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.70 49.0 4.32e-01 73.5% 50.0%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 45.0 3.48e-01 70.6% 30.9%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.68 43.0 3.84e-01 75.0% 45.7%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 53.0 4.24e-01 86.8% 93.2%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.66 56.0 4.20e-01 100.0% 53.3%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 45.0 3.77e-01 72.1% 65.5%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.65 56.0 3.60e-01 95.6% 56.6%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 40.0 3.96e-01 72.1% 60.0%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.60 40.0 2.62e-01 72.1% 15.2%
1a8rA01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.59 43.0 4.09e-01 88.2% 63.5%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 42.0 3.46e-01 75.0% 63.6%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 45.0 3.38e-01 94.1% 63.0%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.56 42.0 4.38e-01 82.4% 95.0%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 37.0 2.81e-01 70.6% 25.0%
3snoA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 38.0 3.22e-01 77.9% 39.7%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.56 40.0 4.32e-01 80.9% 100.0%
1w33A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.55 47.0 3.53e-01 100.0% 54.1%
5lbmA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.52 42.0 3.97e-01 92.6% 73.5%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 45.0 4.02e-01 100.0% 69.7%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.52 44.0 3.80e-01 97.1% 59.5%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.51e-01 86.8% 33.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3771911 109.4.1.1512 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcp11 0.87 59.0 4.16e-01 75.0% 25.3%
4540113 4953.1.1.22 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › Tcp11 0.87 59.0 3.92e-01 75.0% 20.0%
4982483 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.85 61.0 3.48e-01 73.5% 9.7%
3180584 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.79 55.0 4.96e-01 72.1% 54.4%
3327321 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.79 57.0 5.17e-01 76.5% 60.0%
4489833 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.77 51.0 5.12e-01 72.1% 67.1%
5027571 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.76 57.0 3.30e-01 77.9% 10.1%
3436965 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.75 52.0 4.67e-01 72.1% 51.6%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 55.0 5.45e-01 79.4% 84.3%
3551874 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.73 51.0 3.65e-01 72.1% 26.5%
3809086 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.73 54.0 5.02e-01 79.4% 69.4%
5055207 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.72 53.0 4.92e-01 77.9% 65.9%
4281883 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.70 60.0 4.73e-01 92.6% 52.6%
3963947 3826.1.1.25 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer 0.69 54.0 5.14e-01 85.3% 72.5%
3729389 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.69 53.0 4.02e-01 86.8% 35.5%
3927398 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 58.0 5.15e-01 100.0% 70.5%
3604270 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.68 58.0 4.75e-01 97.1% 73.1%
4242465 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.68 50.0 4.53e-01 83.8% 56.8%
3730753 7023.1.1.3 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 0.68 57.0 4.38e-01 94.1% 40.0%
4297853 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 43.0 3.48e-01 100.0% 32.6%
5034253 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.67 51.0 3.76e-01 82.4% 38.9%
3209229 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.66 59.0 3.94e-01 100.0% 28.2%
4075392 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.65 46.0 3.08e-01 73.5% 25.9%
4179286 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.65 50.0 4.69e-01 88.2% 67.1%
3599499 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 59.0 4.49e-01 100.0% 62.7%
4988487 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.64 50.0 4.75e-01 88.2% 72.2%
4929363 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 45.0 3.80e-01 100.0% 44.3%
3214018 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.63 44.0 3.92e-01 72.1% 63.2%
3784055 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.63 46.0 3.73e-01 79.4% 40.8%
3596560 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.63 55.0 4.57e-01 97.1% 99.2%
4092193 3755.4.1.53 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CemA 0.63 45.0 3.52e-01 77.9% 34.2%
4059608 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.60 49.0 3.31e-01 94.1% 22.8%
4650141 4177.1.1.22 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › LXG 0.60 51.0 3.51e-01 94.1% 59.1%
3923888 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.59 52.0 3.63e-01 100.0% 61.4%
3953703 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.59 50.0 4.01e-01 94.1% 48.9%
3907844 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 46.0 3.48e-01 100.0% 34.2%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.57 48.0 3.47e-01 100.0% 85.1%
4932707 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 50.0 4.09e-01 100.0% 100.0%
3400028 3843.1.1.30 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF4781 0.54 44.0 4.12e-01 92.6% 74.1%
3402492 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.54 48.0 3.35e-01 100.0% 32.1%
3245219 5001.1.1.59 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri 0.53 38.0 2.86e-01 83.8% 26.0%
3390311 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.52 44.0 3.76e-01 100.0% 58.2%
3506288 4177.1.1.6 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg 0.51 43.0 3.05e-01 94.1% 61.7%