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HQ683709.1__ADZ31536.1__PaVLD_ORF029L__00029
Bact-VirHQ683709.1__ADZ31536.1__PaVLD_ORF029L__00029
Identity
- Accession:
- HQ683709 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-46
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t3uA01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.75 | 52.0 | 5.08e-01 | 75.0% | 67.4% |
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.73 | 58.0 | 3.74e-01 | 90.0% | 20.1% |
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.70 | 59.0 | 4.28e-01 | 95.0% | 54.1% |
| 3ic3A01 | 3.30.2370.10 | Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase | 0.69 | 57.0 | 5.03e-01 | 100.0% | 62.5% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.65 | 53.0 | 3.83e-01 | 95.0% | 47.1% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.59 | 39.0 | 4.15e-01 | 80.0% | 77.1% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.59 | 44.0 | 2.82e-01 | 97.5% | 14.3% |
| 1p9oA00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.59 | 45.0 | 2.81e-01 | 87.5% | 23.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.57 | 43.0 | 2.75e-01 | 92.5% | 25.3% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.56 | 41.0 | 2.60e-01 | 97.5% | 13.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589727 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 53.0 | 3.95e-01 | 100.0% | 29.0% |
| 5017508 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.74 | 46.0 | 4.94e-01 | 70.0% | 74.3% |
| 4339431 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.72 | 63.0 | 5.39e-01 | 100.0% | 67.7% |
| 2076676 | 4012.1.1.4 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › GyrB_hook | 0.68 | 54.0 | 5.06e-01 | 90.0% | 76.5% |
| 4936323 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.68 | 43.0 | 4.54e-01 | 70.0% | 74.3% |
| 3604536 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.66 | 50.0 | 3.39e-01 | 82.5% | 100.0% |
| 3281384 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.65 | 47.0 | 4.59e-01 | 85.0% | 73.3% |
| 3972963 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 52.0 | 4.54e-01 | 100.0% | 61.8% |
| 4424904 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.61 | 47.0 | 4.56e-01 | 82.5% | 73.3% |
| 4768398 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.60 | 45.0 | 2.96e-01 | 100.0% | 16.9% |
| 3512133 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 44.0 | 2.80e-01 | 100.0% | 24.1% |
| 4961157 | 4029.1.1.1 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › Sirohm_synth_M | 0.56 | 49.0 | 4.57e-01 | 100.0% | 100.0% |
| 4975672 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.55 | 43.0 | 2.97e-01 | 90.0% | 85.3% |
D2
medium
residues 50-98
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 57.0 | 5.14e-01 | 91.8% | 60.0% |
| 2p9bA04 | 1.20.58.520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Amidohydrolase | 0.76 | 64.0 | 5.29e-01 | 98.0% | 63.0% |
| 2k36A00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.67 | 51.0 | 3.67e-01 | 83.7% | 30.2% |
| 3w0lD02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.67 | 58.0 | 3.52e-01 | 100.0% | 63.2% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.64 | 57.0 | 4.12e-01 | 100.0% | 76.6% |
| 5yrzA01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 54.0 | 4.23e-01 | 98.0% | 67.6% |
| 5je8B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 46.0 | 3.27e-01 | 85.7% | 26.5% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 53.0 | 3.32e-01 | 100.0% | 20.6% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.59 | 53.0 | 4.80e-01 | 100.0% | 92.3% |
| 1i39A02 | 1.10.10.460 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribonuclease hii. Domain 2 | 0.58 | 42.0 | 4.39e-01 | 85.7% | 86.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 66.0 | 4.27e-01 | 100.0% | 22.9% |
| 3735307 | 3156.1.1.18 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CLPTM1 | 0.75 | 58.0 | 3.60e-01 | 93.9% | 16.7% |
| 4981951 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.72 | 60.0 | 4.80e-01 | 100.0% | 45.7% |
| 4028753 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.70 | 61.0 | 4.41e-01 | 100.0% | 65.7% |
| 4940378 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.61 | 43.0 | 4.28e-01 | 77.6% | 72.0% |
| 3386364 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 48.0 | 3.14e-01 | 93.9% | 17.6% |
| 3207712 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.59 | 45.0 | 3.79e-01 | 100.0% | 50.0% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 49.0 | 2.99e-01 | 93.9% | 15.1% |