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HQ683709.1__ADZ31546.1__PaVLD_ORF039L__00039
Bact-VirHQ683709.1__ADZ31546.1__PaVLD_ORF039L__00039
Identity
- Accession:
- HQ683709 ↗
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-68
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qhdA01 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 40.0 | 2.91e-01 | 100.0% | 19.4% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 51.0 | 5.40e-01 | 88.9% | 87.7% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.67 | 46.0 | 3.54e-01 | 100.0% | 32.6% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 43.0 | 3.82e-01 | 100.0% | 45.7% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.66 | 47.0 | 4.21e-01 | 100.0% | 53.9% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.63 | 44.0 | 3.96e-01 | 73.0% | 58.4% |
| 2d9oA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 39.0 | 3.38e-01 | 85.7% | 41.0% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.61 | 39.0 | 3.79e-01 | 100.0% | 56.9% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 46.0 | 3.01e-01 | 90.5% | 34.1% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 35.0 | 3.86e-01 | 71.4% | 80.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 29.0 | 3.27e-01 | 73.0% | 63.8% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 3.30e-01 | 100.0% | 39.4% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.54 | 45.0 | 3.55e-01 | 100.0% | 73.0% |
| 2q18X02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.54 | 45.0 | 3.22e-01 | 100.0% | 33.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3226028 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.72 | 44.0 | 3.55e-01 | 100.0% | 33.0% |
| 3668018 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 42.0 | 4.45e-01 | 98.4% | 69.1% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.67 | 40.0 | 4.66e-01 | 98.4% | 92.5% |
| 3692303 | 103.1.1.3 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N | 0.63 | 51.0 | 4.46e-01 | 87.3% | 63.2% |
| 4952233 | 304.123.1.0 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like | 0.63 | 49.0 | 3.64e-01 | 87.3% | 75.4% |
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.62 | 44.0 | 4.69e-01 | 100.0% | 92.5% |
| 4295958 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 46.0 | 3.23e-01 | 90.5% | 49.0% |
| 4607845 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 46.0 | 2.86e-01 | 90.5% | 27.6% |
| 3904125 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 42.0 | 2.69e-01 | 90.5% | 30.7% |
| 4033826 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 40.0 | 3.65e-01 | 90.5% | 78.9% |
| 3971074 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 39.0 | 2.71e-01 | 84.1% | 80.9% |
| 4965039 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.51 | 41.0 | 2.82e-01 | 90.5% | 64.9% |
| 5001620 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.50 | 40.0 | 3.36e-01 | 85.7% | 87.6% |