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HQ683709.1__ADZ31568.1__PaVLD_ORF061R__00061

Bact-Vir

HQ683709.1__ADZ31568.1__PaVLD_ORF061R__00061

Identity

Accession:
HQ683709 ↗
Kingdom:
phage

Quality

61.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Planktothrix_phage_PaV-LD

TaxID: 994601

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-80_112-162
PDB
Domain cluster: rep: HQ683709.1__ADZ31572.1__PaVLD_ORF065R__00065__D18-80_111-161
D2 high residues 662-753
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.71 53.0 5.24e-01 83.7% 73.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.92e-01 88.0% 62.9%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.64 55.0 5.22e-01 92.4% 92.5%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 5.01e-01 78.3% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.87e-01 82.6% 98.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.10e-01 80.4% 76.9%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.98e-01 94.6% 85.9%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 35.0 2.82e-01 79.3% 30.9%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.63e-01 95.7% 60.6%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.57e-01 83.7% 92.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 6.18e-01 85.9% 100.0%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.80e-01 90.2% 88.7%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 57.0 4.66e-01 89.1% 47.8%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 55.0 5.42e-01 91.3% 74.7%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.71e-01 91.3% 50.3%
3252347 4.1.1.224 ↗ beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C 0.70 48.0 5.61e-01 81.5% 100.0%
1548913 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.67 53.0 4.34e-01 90.2% 47.0%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.66 52.0 5.56e-01 81.5% 96.2%
1436138 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 52.0 4.29e-01 90.2% 48.1%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 54.0 4.90e-01 91.3% 84.7%
3970000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.12e-01 95.7% 83.0%
4078003 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 54.0 4.81e-01 100.0% 94.6%
4887870 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 48.0 4.03e-01 98.9% 61.8%
3924850 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.53 45.0 4.10e-01 95.7% 100.0%
1815428 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.53 42.0 4.20e-01 84.8% 86.3%
3907134 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 47.0 3.55e-01 100.0% 81.4%
4483987 374.1.1.2 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › BssC_TutF 0.51 31.0 3.76e-01 88.0% 100.0%
D3 medium residues 361-505
PDB
D4 medium residues 524-608
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.67 50.0 4.00e-01 78.8% 96.4%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.59 41.0 3.56e-01 74.1% 75.0%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 40.0 3.64e-01 75.3% 51.3%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.56 40.0 4.27e-01 97.6% 86.7%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 35.0 3.38e-01 100.0% 56.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 44.0 4.26e-01 90.6% 99.0%
1nzeA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.54 37.0 3.43e-01 75.3% 53.6%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.53 46.0 3.20e-01 97.6% 95.7%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.53 34.0 3.44e-01 100.0% 64.4%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.52 37.0 3.96e-01 100.0% 94.1%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.52 33.0 3.75e-01 74.1% 90.0%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 3.54e-01 81.2% 87.7%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 41.0 2.75e-01 100.0% 23.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243294 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 48.0 5.05e-01 74.1% 81.3%
5011590 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.66 51.0 3.92e-01 82.4% 36.8%
4014278 630.1.1.0 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.66 51.0 3.99e-01 82.4% 94.4%
4026637 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.66 51.0 3.87e-01 84.7% 69.8%
5054868 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.65 50.0 3.85e-01 84.7% 69.8%
5052002 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.65 47.0 3.60e-01 78.8% 33.5%
4565036 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 46.0 3.25e-01 87.1% 40.3%
5076674 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.58 46.0 3.19e-01 88.2% 35.1%
1491760 5000.3.1.5 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Orthopox_A49R 0.57 42.0 3.55e-01 80.0% 48.3%
3406588 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.55 38.0 3.06e-01 72.9% 77.7%
5049134 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.55 36.0 3.52e-01 97.6% 60.0%
4479748 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 36.0 3.54e-01 97.6% 63.3%
4036393 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 36.0 3.53e-01 97.6% 63.3%
4049085 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.54 36.0 3.39e-01 97.6% 55.2%
3378995 108.1.1.111 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 0.54 32.0 3.91e-01 82.4% 92.7%
4360723 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.54 36.0 3.53e-01 98.8% 64.4%
4318044 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.53 35.0 3.49e-01 97.6% 64.4%
4829492 601.18.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ 0.52 40.0 3.69e-01 82.4% 99.1%
3438800 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.51 31.0 3.39e-01 78.8% 74.3%
3810015 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.50 35.0 3.74e-01 96.5% 84.0%
D5 medium residues 609-659
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.63 50.0 4.65e-01 92.2% 82.4%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 45.0 3.45e-01 86.3% 33.8%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 45.0 3.01e-01 84.3% 67.8%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.58 44.0 3.05e-01 78.4% 32.4%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 43.0 4.01e-01 84.3% 85.3%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 44.0 3.36e-01 98.0% 85.4%
2hcmA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 3.25e-01 96.1% 59.7%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.41e-01 100.0% 52.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 39.0 3.58e-01 82.4% 74.3%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.53 40.0 4.04e-01 92.2% 96.1%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.52 38.0 3.35e-01 82.4% 51.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699836 568.1.1.4 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH 0.59 48.0 4.56e-01 90.2% 83.3%
3294389 3184.1.1.1 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.55 42.0 4.10e-01 94.1% 88.3%