←Back to structures

HQ683709.1__ADZ31584.1__PaVLD_ORF077R__00077

Bact-Vir

HQ683709.1__ADZ31584.1__PaVLD_ORF077R__00077

Identity

Accession:
HQ683709 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Planktothrix_phage_PaV-LD

TaxID: 994601

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-130
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 58.0 5.78e-01 100.0% 87.7%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 47.0 4.82e-01 100.0% 75.8%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 62.0 5.35e-01 100.0% 75.5%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 61.0 4.90e-01 100.0% 64.0%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 60.0 5.27e-01 100.0% 72.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 51.0 4.77e-01 100.0% 68.0%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 54.0 5.17e-01 100.0% 77.1%
1lvmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 4.47e-01 100.0% 69.8%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.64 51.0 4.12e-01 99.0% 45.1%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 48.0 4.80e-01 100.0% 77.6%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 47.0 4.67e-01 100.0% 79.4%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.91e-01 82.4% 65.7%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 46.0 4.68e-01 100.0% 86.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 4.14e-01 84.3% 74.3%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 50.0 4.69e-01 100.0% 78.6%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 4.55e-01 100.0% 78.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 32.0 3.21e-01 100.0% 52.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 4.14e-01 100.0% 67.4%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 4.47e-01 100.0% 81.0%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 49.0 4.36e-01 100.0% 72.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 49.0 3.88e-01 100.0% 65.5%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.84e-01 100.0% 60.5%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.44e-01 100.0% 80.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.26e-01 100.0% 75.5%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.07e-01 100.0% 64.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 4.35e-01 100.0% 81.2%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 4.32e-01 100.0% 83.1%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 30.0 3.40e-01 76.5% 74.7%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.50 36.0 3.34e-01 73.5% 89.9%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 43.0 3.71e-01 100.0% 61.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1560729 1.1.5.35 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.68 58.0 5.19e-01 100.0% 65.3%
3972305 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 55.0 5.83e-01 99.0% 97.8%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.67 55.0 5.79e-01 99.0% 97.8%
4344991 1.1.5.35 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.67 58.0 5.35e-01 100.0% 73.8%
4393593 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.67 55.0 5.74e-01 100.0% 94.7%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 54.0 5.28e-01 100.0% 82.7%
3967435 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.66 54.0 5.58e-01 100.0% 93.7%
3367044 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.65 59.0 4.37e-01 100.0% 50.4%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.64 59.0 5.53e-01 100.0% 93.5%
4988096 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 58.0 5.58e-01 100.0% 97.4%
3204035 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.62 47.0 3.33e-01 100.0% 24.7%
3593521 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.61 37.0 3.44e-01 100.0% 48.8%
3184103 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 53.0 4.00e-01 100.0% 44.6%
3210702 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 47.0 3.48e-01 100.0% 31.4%
3835816 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.58 42.0 4.15e-01 84.3% 70.9%
3371896 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.57 42.0 4.03e-01 83.3% 66.4%
3514672 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 50.0 4.33e-01 100.0% 81.2%
4926888 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 49.0 4.53e-01 100.0% 83.1%
1695162 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 48.0 3.79e-01 100.0% 57.9%
4998991 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 48.0 4.32e-01 100.0% 85.7%
58 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 47.0 4.44e-01 100.0% 80.2%
3959095 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.52 42.0 3.98e-01 100.0% 73.3%
4977763 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 45.0 3.99e-01 100.0% 83.2%