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HQ683709.1__ADZ31607.1__PaVLD_ORF100R__00100

Bact-Vir

HQ683709.1__ADZ31607.1__PaVLD_ORF100R__00100

Identity

Accession:
HQ683709 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Planktothrix_phage_PaV-LD

TaxID: 994601

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-96
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 53.0 3.47e-01 71.4% 18.5%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.76 67.0 4.81e-01 100.0% 90.0%
3ejnA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.72 55.0 4.32e-01 85.7% 51.4%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.68 54.0 4.35e-01 100.0% 42.7%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 56.0 4.98e-01 100.0% 65.4%
1zbpA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 58.0 4.79e-01 100.0% 54.1%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.65 52.0 3.93e-01 91.8% 78.2%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 54.0 3.70e-01 100.0% 64.8%
3k59A07 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.65 43.0 3.22e-01 71.4% 24.6%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 58.0 4.53e-01 98.0% 76.5%
2heuA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 43.0 2.82e-01 71.4% 67.4%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 50.0 3.79e-01 100.0% 75.2%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.62 51.0 3.45e-01 98.0% 71.9%
4wriA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 46.0 3.21e-01 87.8% 23.5%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.59 48.0 3.30e-01 89.8% 44.9%
3i5xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.11e-01 100.0% 35.8%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.56 45.0 3.35e-01 95.9% 65.8%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 39.0 3.66e-01 98.0% 58.2%
4j1qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 43.0 2.59e-01 95.9% 11.0%
1ny9A00 1.10.490.50 Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators 0.53 42.0 3.62e-01 100.0% 90.4%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 46.0 3.05e-01 98.0% 52.3%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.16e-01 93.9% 92.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457692 3419.1.1.0 ↗ alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA 0.79 69.0 6.95e-01 98.0% 96.0%
3693124 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.77 53.0 4.30e-01 71.4% 38.9%
4982322 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.75 64.0 4.19e-01 100.0% 41.4%
5024349 601.30.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.71 60.0 4.25e-01 98.0% 66.3%
3396226 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.71 59.0 3.81e-01 95.9% 48.3%
4960839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 4.28e-01 89.8% 42.0%
3280795 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 60.0 4.35e-01 100.0% 86.4%
5080213 3281.1.1.0 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.67 54.0 3.10e-01 93.9% 45.6%
3446746 631.1.1.1 ↗ alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.67 56.0 3.75e-01 100.0% 28.6%
4606671 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.66 53.0 3.20e-01 100.0% 18.7%
4385438 2498.1.1.11 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48,Peptidase_M48_N 0.65 56.0 3.34e-01 100.0% 20.7%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 44.0 4.02e-01 71.4% 58.5%
4559285 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 53.0 4.44e-01 98.0% 55.6%
1557041 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 46.0 3.87e-01 87.8% 46.8%
5033654 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.61 48.0 3.35e-01 100.0% 73.3%
3690888 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.56 40.0 3.28e-01 77.6% 68.4%
3926773 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.55 45.0 3.80e-01 100.0% 64.2%
3166693 109.1.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › MetRS-N 0.52 35.0 2.95e-01 71.4% 37.0%
D2 high residues 103-185
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D183-251
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 36.0 3.90e-01 98.8% 71.6%
1aoyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 3.86e-01 100.0% 66.7%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.58 40.0 3.76e-01 100.0% 59.4%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.08e-01 98.8% 36.7%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.15e-01 100.0% 81.1%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.54 31.0 3.35e-01 74.7% 66.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.83e-01 98.8% 73.0%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 30.0 3.21e-01 94.0% 62.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.66e-01 97.6% 65.0%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.50 38.0 3.18e-01 81.9% 66.2%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 38.0 2.70e-01 85.5% 76.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 56.0 4.97e-01 100.0% 52.2%
3291502 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 51.0 5.94e-01 100.0% 91.7%
3588288 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.76 68.0 5.54e-01 100.0% 54.0%
4033072 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.76 68.0 6.81e-01 100.0% 95.3%
3953987 101.1.2.213 ↗ alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.59 43.0 4.39e-01 100.0% 80.0%
3960477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.57e-01 98.8% 96.9%
4012111 812.2.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain 0.58 31.0 3.42e-01 74.7% 65.1%
3282970 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 37.0 4.10e-01 91.6% 84.6%
3633871 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.39e-01 88.0% 64.1%
4936364 2007.13.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.56 48.0 3.61e-01 98.8% 71.2%
7696 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.54 31.0 3.31e-01 74.7% 64.3%
4981888 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 4.01e-01 98.8% 81.2%
2056822 101.1.2.213 ↗ alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.54 41.0 4.23e-01 100.0% 88.2%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 40.0 3.77e-01 98.8% 63.9%
5055105 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 4.00e-01 84.3% 87.1%
3926186 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 42.0 2.91e-01 92.8% 85.2%
3992493 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 39.0 2.62e-01 86.7% 69.0%
4947850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.80e-01 98.8% 70.5%
3489240 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 41.0 2.76e-01 92.8% 88.5%