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HQ698895.1__AEX56002.1__S-CBS4_gp035__00035

Bact-Vir

HQ698895.1__AEX56002.1__S-CBS4_gp035__00035

Identity

Accession:
HQ698895 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-111
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05939.19 best Phage_min_tail 45.6 1.10e-11 99.0% 66.7%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 39.0 4.26e-01 70.0% 58.8%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.75 40.0 4.41e-01 70.0% 64.2%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.72 40.0 4.29e-01 72.0% 61.8%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.68 29.0 3.26e-01 100.0% 50.6%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 38.0 3.99e-01 70.0% 61.8%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 43.0 4.70e-01 100.0% 80.7%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 50.0 4.89e-01 100.0% 75.2%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 42.0 4.47e-01 100.0% 75.0%
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 37.0 4.24e-01 98.0% 75.3%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.63 58.0 4.97e-01 100.0% 66.7%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.63 46.0 4.26e-01 100.0% 60.8%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 41.0 4.24e-01 99.0% 70.5%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 47.0 4.63e-01 100.0% 76.2%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.62 29.0 3.21e-01 100.0% 53.0%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 46.0 3.98e-01 100.0% 51.7%
2ec8A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.19e-01 100.0% 68.3%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 40.0 3.98e-01 100.0% 64.4%
2ppqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 39.0 4.07e-01 100.0% 70.2%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.60 44.0 4.46e-01 100.0% 77.8%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.60 48.0 4.40e-01 100.0% 66.2%
4d9uA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 37.0 3.94e-01 100.0% 70.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 37.0 3.64e-01 100.0% 57.7%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.58 35.0 3.64e-01 72.0% 64.4%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 3.53e-01 73.0% 74.1%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 38.0 3.97e-01 100.0% 73.1%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 37.0 3.68e-01 99.0% 61.9%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 33.0 3.66e-01 100.0% 74.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.57 51.0 3.96e-01 100.0% 46.7%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 36.0 3.17e-01 100.0% 41.4%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 34.0 3.20e-01 100.0% 46.9%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.82e-01 72.0% 71.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 38.0 3.86e-01 100.0% 73.0%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.76e-01 72.0% 71.0%
3i1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 36.0 3.58e-01 100.0% 64.1%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.62e-01 71.0% 71.1%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 46.0 3.59e-01 98.0% 52.7%
3l7oA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 33.0 3.71e-01 95.0% 83.3%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.43e-01 93.0% 63.4%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.49e-01 100.0% 63.4%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 30.0 3.01e-01 99.0% 50.9%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 45.0 4.05e-01 99.0% 71.1%
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.51 19.0 2.98e-01 96.0% 96.7%
2lfpA01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.51 40.0 3.66e-01 100.0% 63.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.91 86.0 8.43e-01 100.0% 94.3%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.88 82.0 7.95e-01 100.0% 90.0%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.88 82.0 8.04e-01 100.0% 93.3%
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.85 80.0 7.61e-01 100.0% 92.1%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 59.0 6.18e-01 100.0% 85.6%
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.79 73.0 6.56e-01 100.0% 78.5%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 69.0 5.50e-01 100.0% 67.7%
4952429 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 54.0 5.48e-01 100.0% 76.0%
1117606 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.74 67.0 6.07e-01 100.0% 78.4%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.73 67.0 6.15e-01 100.0% 78.5%
3517372 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.73 53.0 5.86e-01 92.0% 100.0%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.72 64.0 6.16e-01 100.0% 87.0%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 65.0 5.95e-01 100.0% 79.2%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.70 64.0 5.62e-01 100.0% 77.2%
2471641 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.70 63.0 5.53e-01 100.0% 75.2%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.69 63.0 5.61e-01 100.0% 76.4%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 48.0 5.17e-01 99.0% 84.7%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 63.0 5.49e-01 100.0% 75.8%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 46.0 4.39e-01 100.0% 59.1%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.69 61.0 5.46e-01 100.0% 77.2%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.69 59.0 5.75e-01 100.0% 83.6%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 62.0 5.37e-01 100.0% 77.1%
4945299 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.67 36.0 3.41e-01 100.0% 43.3%
5073696 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.64 35.0 3.39e-01 100.0% 48.2%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.64 52.0 4.88e-01 100.0% 71.2%
4966226 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.63 34.0 3.38e-01 100.0% 47.3%
4982756 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.63 56.0 4.59e-01 100.0% 92.1%
3950275 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 39.0 4.16e-01 100.0% 72.9%
3279708 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 38.0 3.69e-01 86.0% 53.9%
5075688 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.61 34.0 2.97e-01 100.0% 35.9%
4994607 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.61 33.0 3.20e-01 100.0% 44.3%
4934997 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.60 34.0 3.20e-01 100.0% 45.0%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.60 55.0 4.23e-01 100.0% 60.5%
5079051 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.60 33.0 3.15e-01 100.0% 45.0%
3795203 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 44.0 3.19e-01 100.0% 28.3%
4944562 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.59 33.0 3.21e-01 100.0% 47.3%
5075589 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.59 32.0 2.96e-01 100.0% 40.8%
5019301 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.58 46.0 3.49e-01 87.0% 56.0%
4591715 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.57 44.0 3.46e-01 86.0% 61.7%
4956104 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 33.0 3.25e-01 100.0% 52.7%
5004599 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 31.0 2.83e-01 100.0% 39.3%
4422227 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 32.0 3.05e-01 100.0% 48.3%
4943359 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.54 45.0 3.50e-01 98.0% 39.6%
4455935 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 45.0 3.58e-01 95.0% 76.0%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.54 44.0 3.48e-01 98.0% 40.4%
5031633 304.8.1.118 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2 0.54 44.0 3.93e-01 100.0% 61.3%
3643481 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.96e-01 88.0% 73.2%
4021762 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 43.0 2.63e-01 86.0% 36.9%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.54 43.0 3.99e-01 100.0% 66.9%
5001314 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 44.0 3.41e-01 98.0% 38.0%
4557453 304.102.1.9 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.54 44.0 3.41e-01 98.0% 38.0%
4077036 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 43.0 3.46e-01 98.0% 40.9%
4103990 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 45.0 3.57e-01 98.0% 59.6%
5058386 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 44.0 3.65e-01 98.0% 49.5%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.53 43.0 3.84e-01 98.0% 61.3%
4223490 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 45.0 3.61e-01 98.0% 60.5%
5033279 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 44.0 3.45e-01 97.0% 50.8%
3332951 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 40.0 2.79e-01 100.0% 23.7%
3735123 331.3.1.30 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.51 46.0 3.33e-01 100.0% 59.9%
3750856 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 42.0 2.99e-01 91.0% 83.7%
4596173 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.50 42.0 2.91e-01 93.0% 83.6%