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HQ698895.1AEX56014.1S-CBS4_gp047__00047

Bact-Vir

HQ698895.1__AEX56014.1__S-CBS4_gp047__00047

Identity

Accession:: HQ698895 ↗
Kingdom:: phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-CBS4

TaxID: 756275

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 171-221

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pc6A00	1.10.3790.10	Mainly Alpha › Orthogonal Bundle › NinB fold › NinB	0.52	38.0	2.84e-01	80.4%	35.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590404	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.58	35.0	2.80e-01	100.0%	27.6%
3280900	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.56	37.0	2.74e-01	82.4%	23.3%
3962766	330.10.1.1 ↗	a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO	0.52	36.0	2.80e-01	72.5%	41.7%

D2 medium residues 378-523

PDB

Domain cluster: rep: MW015081.1__QPX47966.1__X__00001__D12-193

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2v31A01	2.40.30.180	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain	0.74	45.0	5.48e-01	74.0%	92.8%
3w1eA03	2.40.10.410	Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain	0.58	36.0	4.45e-01	93.8%	100.0%
1o5lA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.52	35.0	3.72e-01	89.7%	76.7%
5b6iA02	2.40.30.90	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like	0.52	35.0	4.04e-01	95.9%	94.4%
2q7nA05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	32.0	3.70e-01	97.9%	88.8%
4cvuA05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	30.0	3.66e-01	99.3%	94.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4338601	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.68	37.0	4.58e-01	97.3%	84.4%
4943639	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.67	39.0	5.00e-01	95.9%	100.0%
1790393	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.66	38.0	4.84e-01	96.6%	98.8%
3252937	1.1.7.35 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH	0.66	46.0	5.44e-01	95.2%	100.0%
4429352	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.63	38.0	4.70e-01	93.8%	96.7%
3415428	1.1.7.69 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel	0.56	36.0	4.14e-01	97.3%	90.5%
3288338	1.1.7.27 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905	0.55	35.0	4.22e-01	95.9%	98.9%
4946423	1.1.7.138 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1	0.55	36.0	4.27e-01	93.8%	97.0%
3574784	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	39.0	4.48e-01	96.6%	99.1%
3327380	1.1.11.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain	0.51	31.0	3.57e-01	95.2%	83.8%
3612294	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.51	36.0	3.49e-01	92.5%	64.2%
5040372	11.1.1.1122 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7282	0.50	36.0	3.83e-01	97.3%	85.6%

D3 medium residues 588-619

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gxgA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.75	41.0	2.65e-01	90.6%	12.1%
3dtdD00	2.60.40.1880	Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein	0.64	54.0	3.54e-01	100.0%	42.8%
1pc6A00	1.10.3790.10	Mainly Alpha › Orthogonal Bundle › NinB fold › NinB	0.61	48.0	3.25e-01	96.9%	56.0%
2qbyB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	40.0	2.86e-01	84.4%	26.4%
3lapA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	38.0	3.09e-01	90.6%	35.3%
1kafA00	3.90.1150.20	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain	0.54	44.0	3.18e-01	100.0%	94.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4100500	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.59	43.0	3.87e-01	84.4%	62.0%
4987043	2002.1.1.73 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT	0.56	41.0	2.37e-01	81.2%	28.1%
3685671	219.1.1.22 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Rad4	0.53	43.0	2.54e-01	100.0%	37.6%