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HQ698895.1__AEX56016.1__S-CBS4_gp049__00049
Bact-VirHQ698895.1__AEX56016.1__S-CBS4_gp049__00049
Identity
- Accession:
- HQ698895 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-54
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7aA01 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.70 | 59.0 | 4.21e-01 | 91.8% | 41.9% |
| 1yp2D01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.67 | 55.0 | 3.41e-01 | 93.9% | 32.6% |
| 2y6pB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.64 | 52.0 | 3.38e-01 | 93.9% | 33.9% |
| 3gf8A01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 52.0 | 3.72e-01 | 98.0% | 74.7% |
| 2oodA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.58 | 46.0 | 3.50e-01 | 95.9% | 74.3% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 48.0 | 3.24e-01 | 95.9% | 25.8% |
| 3e59B02 | 3.30.60.140 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 37.0 | 4.05e-01 | 87.8% | 92.1% |
| 2p9mB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 37.0 | 2.92e-01 | 79.6% | 82.9% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 31.0 | 2.67e-01 | 93.9% | 32.2% |
| 3tqdA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 36.0 | 2.47e-01 | 85.7% | 77.0% |
| 2xmeF00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 39.0 | 2.74e-01 | 98.0% | 92.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927005 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.68 | 56.0 | 4.15e-01 | 91.8% | 50.4% |
| 4569149 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.64 | 53.0 | 3.38e-01 | 93.9% | 32.9% |
| 5039313 | 3769.1.1.0 ↗ | 0.63 | 48.0 | 5.00e-01 | 83.7% | 95.6% | |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.62 | 51.0 | 4.82e-01 | 93.9% | 93.3% |
| 4964967 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.61 | 47.0 | 3.42e-01 | 85.7% | 33.6% |
| 4958534 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 45.0 | 3.72e-01 | 98.0% | 43.3% |
| 1140904 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.57 | 48.0 | 3.22e-01 | 95.9% | 25.1% |
| 4927644 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 40.0 | 3.01e-01 | 81.6% | 83.9% |
| 3943236 | 223.1.1.104 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF26965 | 0.55 | 45.0 | 3.04e-01 | 95.9% | 24.3% |
| 3967921 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.53 | 41.0 | 3.53e-01 | 91.8% | 52.5% |
| 5053976 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.53 | 38.0 | 3.58e-01 | 85.7% | 84.3% |
| 5062859 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 44.0 | 3.32e-01 | 98.0% | 64.8% |
| 3970590 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.50 | 37.0 | 2.90e-01 | 91.8% | 36.4% |
D2
high
residues 69-134
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16778.11 best | Phage_tail_APC | 87.3 | 6.80e-25 | 90.9% | 98.3% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.80 | 69.0 | 5.67e-01 | 95.5% | 59.8% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.74 | 51.0 | 5.73e-01 | 72.7% | 92.2% |
| 2fefA01 | 1.20.1440.70 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like | 0.74 | 55.0 | 4.41e-01 | 78.8% | 47.2% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.74 | 65.0 | 5.38e-01 | 97.0% | 96.5% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.74 | 66.0 | 5.10e-01 | 98.5% | 85.0% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.73 | 65.0 | 4.52e-01 | 100.0% | 83.3% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 62.0 | 5.38e-01 | 100.0% | 76.5% |
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.69 | 60.0 | 4.70e-01 | 100.0% | 75.3% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 58.0 | 5.62e-01 | 93.9% | 88.0% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.68 | 59.0 | 5.54e-01 | 100.0% | 92.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.68 | 49.0 | 5.36e-01 | 75.8% | 96.2% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 50.0 | 5.18e-01 | 80.3% | 93.5% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.67 | 57.0 | 4.09e-01 | 98.5% | 45.2% |
| 2yyiA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.67 | 57.0 | 4.08e-01 | 98.5% | 45.0% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.66 | 48.0 | 4.48e-01 | 80.3% | 60.5% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 56.0 | 5.48e-01 | 98.5% | 95.9% |
| 1wbeA01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.65 | 56.0 | 4.09e-01 | 98.5% | 63.8% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 56.0 | 5.15e-01 | 100.0% | 90.8% |
| 3vr4B04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.64 | 53.0 | 4.19e-01 | 97.0% | 47.0% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 47.0 | 4.62e-01 | 78.8% | 77.1% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.64 | 55.0 | 4.27e-01 | 98.5% | 89.9% |
| 3l0iA01 | 1.20.120.1520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 51.0 | 3.83e-01 | 90.9% | 52.3% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.62 | 45.0 | 3.87e-01 | 78.8% | 46.4% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.62 | 52.0 | 4.80e-01 | 93.9% | 81.4% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 48.0 | 3.72e-01 | 84.8% | 38.6% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.62 | 45.0 | 4.57e-01 | 78.8% | 97.0% |
| 7csoA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.62 | 52.0 | 3.73e-01 | 100.0% | 42.3% |
| 4pkwA02 | 1.10.2030.10 | Mainly Alpha › Orthogonal Bundle › Anthrax toxin lethal factor, domain 3, chain A › Anthrax toxin lethal factor, domain 3, chain A | 0.55 | 42.0 | 4.29e-01 | 87.9% | 84.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 139731 | 3809.1.1.1 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Phage_tail_APC | 0.82 | 71.0 | 6.12e-01 | 93.9% | 63.0% |
| 3734442 | 192.8.1.35 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 | 0.73 | 54.0 | 4.31e-01 | 78.8% | 41.5% |
| 3999152 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.73 | 65.0 | 5.25e-01 | 100.0% | 72.8% |
| 4582075 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.73 | 64.0 | 5.76e-01 | 98.5% | 80.0% |
| 3278268 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.73 | 64.0 | 4.73e-01 | 100.0% | 69.1% |
| 4657744 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.72 | 61.0 | 3.99e-01 | 95.5% | 35.5% |
| 3481090 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 61.0 | 3.51e-01 | 98.5% | 15.5% |
| 375971 | 633.21.1.1 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF326 | 0.71 | 62.0 | 5.38e-01 | 100.0% | 73.3% |
| 3199024 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 61.0 | 4.32e-01 | 98.5% | 62.4% |
| 3966246 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.70 | 62.0 | 5.41e-01 | 100.0% | 76.0% |
| 3428029 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.70 | 59.0 | 5.14e-01 | 93.9% | 96.0% |
| 3783655 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.70 | 62.0 | 4.79e-01 | 100.0% | 60.7% |
| 3306934 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.69 | 59.0 | 5.00e-01 | 95.5% | 88.2% |
| 4338968 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.69 | 61.0 | 4.73e-01 | 100.0% | 60.7% |
| 3322308 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.69 | 59.0 | 5.14e-01 | 98.5% | 93.3% |
| 3804215 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.68 | 58.0 | 5.16e-01 | 98.5% | 88.0% |
| 4572664 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.68 | 50.0 | 4.91e-01 | 78.8% | 77.1% |
| 4206375 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.67 | 60.0 | 4.54e-01 | 100.0% | 58.7% |
| 4081214 | 605.1.1.290 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Phage_Nu1 | 0.67 | 49.0 | 4.91e-01 | 81.8% | 92.9% |
| 3925125 | 4207.1.1.60 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF31020 | 0.67 | 55.0 | 4.79e-01 | 97.0% | 82.7% |
| 3935953 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.66 | 56.0 | 4.58e-01 | 100.0% | 57.0% |
| 3372060 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.64 | 55.0 | 4.39e-01 | 98.5% | 81.5% |
| 4942070 | 5050.1.1.87 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LPG_synthase_TM | 0.61 | 53.0 | 3.60e-01 | 100.0% | 69.6% |
| 4944749 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.58 | 47.0 | 3.42e-01 | 100.0% | 66.2% |
| 3521510 | 192.7.1.73 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF31020 | 0.56 | 45.0 | 4.03e-01 | 98.5% | 78.2% |