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HSP70h

Euk-Vir

Cordyline_virus_1

HSP70h__YP_009506346__Cordyline_virus_1__937809

Identity

Accession:
YP_009506346 ↗
Protein ID:
HSP70h
Kingdom:
euk

Quality

86.0 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Velarivirus› Cordyline_virus_1

TaxID: 937809

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-174
PDB
Domain cluster: rep: heat-shock_protein__NP_619695__Lettuce_infectious_yellows_virus__31713__D2-172
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00012.27 best HSP70 46.4 2.50e-12 98.3% 28.1%
D2 high residues 372-473
PDB
Domain cluster: rep: heat_shock_protein_70_homolog__YP_009241368__Grapevine_leafroll-associated_virus_13__1815581__D381-469
D3 high residues 493-547
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 37.0 3.05e-01 81.8% 36.4%
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 49.0 3.00e-01 98.2% 85.0%
1z0xA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 36.0 3.48e-01 92.7% 53.0%
2cunA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.57 46.0 3.18e-01 90.9% 94.5%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 38.0 3.62e-01 74.5% 58.5%
1fc6A01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.56 45.0 3.88e-01 94.5% 100.0%
4wu0A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 47.0 2.92e-01 100.0% 93.9%
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 47.0 3.45e-01 96.4% 53.3%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.77e-01 80.0% 75.0%
2l22A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.53 35.0 3.15e-01 100.0% 44.0%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.16e-01 100.0% 31.4%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.24e-01 100.0% 39.4%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.51 41.0 3.52e-01 90.9% 83.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4003631 109.4.1.1578 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30504 0.73 49.0 3.13e-01 92.7% 15.5%
3492262 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.71 50.0 4.07e-01 74.5% 89.0%
4637249 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 58.0 3.93e-01 100.0% 38.6%
3213120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 51.0 3.74e-01 83.6% 46.7%
4065433 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 52.0 3.39e-01 96.4% 20.4%
3284182 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.63 49.0 3.20e-01 90.9% 72.1%
4369892 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.60 41.0 4.09e-01 85.5% 68.3%
3927768 193.1.1.8 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › HOOK_N 0.60 50.0 3.69e-01 96.4% 76.8%
4037941 4966.1.1.1 ↗ alpha arrays › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase › RNA_pol 0.56 46.0 4.14e-01 94.5% 72.5%
4864636 7008.1.1.1 ↗ alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.56 45.0 3.88e-01 96.4% 59.8%
3333385 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.55 45.0 3.73e-01 94.5% 79.0%
4961280 101.1.2.939 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26270 0.54 39.0 3.72e-01 90.9% 64.6%
4681908 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.53 42.0 3.95e-01 96.4% 70.7%
4567840 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.52 35.0 3.58e-01 70.9% 76.4%
5003560 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.51 42.0 4.02e-01 100.0% 78.5%
4018277 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.51 43.0 3.01e-01 94.5% 46.7%
988057 6067.1.1.1 ↗ alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › SGTA_dimer 0.50 36.0 3.51e-01 80.0% 75.4%
D4 medium residues 175-223_311-367
PDB
Domain cluster: rep: heat_shock_protein_70__YP_293699__Tomato_chlorosis_virus__67754__D171-224_298-370
D5 medium residues 224-310
PDB
Domain cluster: rep: p67__YP_003075968__Carrot_yellow_leaf_virus__656190__D231-307