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Hc-Pro_protein
Euk-VirTomato_mild_mottle_virus
Hc-Pro_protein__YP_009509088__Tomato_mild_mottle_virus__178599
Identity
- Accession:
- YP_009509088 ↗
- Protein ID:
- Hc-Pro_protein
- Kingdom:
- euk
Quality
56.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Ipomovirus›
Tomato_mild_mottle_virus
TaxID: 178599
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 154-209_211-389
Domain cluster:
rep: HC-Pro__YP_851200__Blackberry_virus_Y__323118__D78-324
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00851.25 best | Peptidase_C6 | 140.1 | 1.50e-40 | 90.6% | 41.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ifuA02 | 3.90.70.60 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Porcine arterivirus-type cysteine proteinase alpha domain | 0.59 | 30.0 | 4.22e-01 | 84.3% | 100.0% |
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.52 | 21.0 | 3.12e-01 | 86.8% | 86.0% |
D2
medium
residues 74-153