Hel

Euk-Vir

Rabbit_coronavirus_HKU14

Hel__YP_009924420__Rabbit_coronavirus_HKU14__1160968

Identity

90.6 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Rabbit_coronavirus_HKU14

TaxID: 1160968

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-108

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20632.3 best	CoV_NSP13_ZBD	159.8	2.60e-47	86.8%	98.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2iybE00	2.10.110.10	Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein	0.57	28.0	3.47e-01	70.8%	76.6%
2miuA00	2.10.110.10	Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein	0.54	33.0	3.48e-01	72.6%	66.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3495690	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.53	30.0	3.85e-01	100.0%	98.3%

D2 high residues 264-441

PDB

Domain cluster: rep: NC_074643__YP_010772404.1__QIT40-gp03__00003__D149-351

Pfam (5)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	22.0	1.80e-04	88.8%	43.9%
PF13604.13	AAA_30	37.5	3.10e-09	80.9%	59.2%
PF13245.13	AAA_19	34.7	2.60e-08	79.2%	89.5%
PF05127.22	NAT10_TcmA_helicase	26.8	6.30e-06	67.4%	58.8%
PF13086.13	AAA_11	33.2	6.90e-08	53.9%	31.9%

D3 high residues 461-588

PDB

Domain cluster: rep: IMGVR_UViG_3300009509_000914-3300009509-Ga0123573_1001185116__D490-580_655-727

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13087.13 best	AAA_12	43.1	5.00e-11	92.2%	55.9%
PF01443.25	Viral_helicase1	21.8	2.10e-04	82.8%	24.6%
PF13538.13	UvrD_C_2	30.0	5.40e-07	35.9%	82.7%

D4 medium residues 149-227

PDB

Domain cluster: rep: nsp13__YP_009755921__Canada_goose_coronavirus__2569586__D146-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20631.4 best	CoV_NSP13_1B	134.0	2.60e-39	100.0%	96.3%